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Gene: UCK1 |
Gene summary for UCK1 |
 Gene summary. |
| Gene information | Species | Human | Gene symbol | UCK1 | Gene ID | 83549 |
| Gene name | uridine-cytidine kinase 1 | |
| Gene Alias | URK1 | |
| Cytomap | 9q34.13 | |
| Gene Type | protein-coding | GO ID | GO:0006139 | UniProtAcc | A0A024R8E7 |
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Malignant transformation analysis |
| Identification of the aberrant gene expression in precancerous and cancerous lesions by comparing the gene expression of stem-like cells in diseased tissues with normal stem cells |
| Malignant transformation involving gene list. |
| Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
| 83549 | UCK1 | LZE4T | Human | Esophagus | ESCC | 2.36e-02 | 7.98e-02 | 0.0811 |
| 83549 | UCK1 | LZE7T | Human | Esophagus | ESCC | 5.37e-04 | 2.36e-01 | 0.0667 |
| 83549 | UCK1 | LZE20T | Human | Esophagus | ESCC | 1.66e-05 | 1.78e-01 | 0.0662 |
| 83549 | UCK1 | LZE24T | Human | Esophagus | ESCC | 1.07e-09 | 2.48e-01 | 0.0596 |
| 83549 | UCK1 | P1T-E | Human | Esophagus | ESCC | 2.32e-07 | 3.52e-01 | 0.0875 |
| 83549 | UCK1 | P2T-E | Human | Esophagus | ESCC | 5.15e-46 | 7.00e-01 | 0.1177 |
| 83549 | UCK1 | P4T-E | Human | Esophagus | ESCC | 6.99e-11 | 2.80e-01 | 0.1323 |
| 83549 | UCK1 | P5T-E | Human | Esophagus | ESCC | 2.74e-10 | 2.07e-01 | 0.1327 |
| 83549 | UCK1 | P8T-E | Human | Esophagus | ESCC | 2.06e-22 | 3.89e-01 | 0.0889 |
| 83549 | UCK1 | P9T-E | Human | Esophagus | ESCC | 2.50e-15 | 2.16e-01 | 0.1131 |
| 83549 | UCK1 | P10T-E | Human | Esophagus | ESCC | 3.00e-17 | 3.57e-01 | 0.116 |
| 83549 | UCK1 | P11T-E | Human | Esophagus | ESCC | 7.15e-19 | 5.55e-01 | 0.1426 |
| 83549 | UCK1 | P12T-E | Human | Esophagus | ESCC | 1.22e-12 | 2.29e-01 | 0.1122 |
| 83549 | UCK1 | P15T-E | Human | Esophagus | ESCC | 1.40e-12 | 2.38e-01 | 0.1149 |
| 83549 | UCK1 | P16T-E | Human | Esophagus | ESCC | 4.80e-19 | 2.76e-01 | 0.1153 |
| 83549 | UCK1 | P17T-E | Human | Esophagus | ESCC | 3.00e-09 | 3.71e-01 | 0.1278 |
| 83549 | UCK1 | P19T-E | Human | Esophagus | ESCC | 2.65e-08 | 4.33e-01 | 0.1662 |
| 83549 | UCK1 | P20T-E | Human | Esophagus | ESCC | 3.00e-12 | 2.14e-01 | 0.1124 |
| 83549 | UCK1 | P21T-E | Human | Esophagus | ESCC | 8.06e-21 | 3.58e-01 | 0.1617 |
| 83549 | UCK1 | P22T-E | Human | Esophagus | ESCC | 1.83e-18 | 3.20e-01 | 0.1236 |
| Page: 1 2 3 4 5 |
| Transcriptomic changes along malignancy continuum. |
| Tissue | Expression Dynamics | Abbreviation |
| Esophagus |  | ESCC: Esophageal squamous cell carcinoma |
| HGIN: High-grade intraepithelial neoplasias | ||
| LGIN: Low-grade intraepithelial neoplasias | ||
| Liver |  | HCC: Hepatocellular carcinoma |
| NAFLD: Non-alcoholic fatty liver disease | ||
| Oral Cavity |  | EOLP: Erosive Oral lichen planus |
| LP: leukoplakia | ||
| NEOLP: Non-erosive oral lichen planus | ||
| OSCC: Oral squamous cell carcinoma |
| ∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
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Malignant transformation related pathway analysis |
| Find out the enriched GO biological processes and KEGG pathways involved in transition from healthy to precancer to cancer |
| Figure of enriched GO biological processes. |
| Tissue | Disease Stage | Enriched GO biological Processes |
| Colorectum | AD |  |
| Colorectum | SER |  |
| Colorectum | MSS |  |
| Colorectum | MSI-H |  |
| Colorectum | FAP |  |
| ∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
| Page: 1 2 3 4 5 6 7 8 9 |
| Enriched GO biological processes. |
| GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
| GO:0006753110 | Esophagus | ESCC | nucleoside phosphate metabolic process | 288/8552 | 497/18723 | 1.80e-08 | 3.50e-07 | 288 |
| GO:0019693111 | Esophagus | ESCC | ribose phosphate metabolic process | 234/8552 | 396/18723 | 4.24e-08 | 7.76e-07 | 234 |
| GO:0009117111 | Esophagus | ESCC | nucleotide metabolic process | 282/8552 | 489/18723 | 4.70e-08 | 8.50e-07 | 282 |
| GO:0009141111 | Esophagus | ESCC | nucleoside triphosphate metabolic process | 78/8552 | 112/18723 | 2.36e-07 | 3.59e-06 | 78 |
| GO:0009259111 | Esophagus | ESCC | ribonucleotide metabolic process | 224/8552 | 385/18723 | 4.41e-07 | 6.00e-06 | 224 |
| GO:0046390110 | Esophagus | ESCC | ribose phosphate biosynthetic process | 119/8552 | 190/18723 | 1.73e-06 | 2.06e-05 | 119 |
| GO:000919918 | Esophagus | ESCC | ribonucleoside triphosphate metabolic process | 61/8552 | 89/18723 | 1.07e-05 | 1.01e-04 | 61 |
| GO:000916516 | Esophagus | ESCC | nucleotide biosynthetic process | 150/8552 | 254/18723 | 1.12e-05 | 1.06e-04 | 150 |
| GO:0009260110 | Esophagus | ESCC | ribonucleotide biosynthetic process | 112/8552 | 182/18723 | 1.12e-05 | 1.06e-04 | 112 |
| GO:190129316 | Esophagus | ESCC | nucleoside phosphate biosynthetic process | 151/8552 | 256/18723 | 1.15e-05 | 1.08e-04 | 151 |
| GO:000914219 | Esophagus | ESCC | nucleoside triphosphate biosynthetic process | 58/8552 | 85/18723 | 2.16e-05 | 1.87e-04 | 58 |
| GO:000920118 | Esophagus | ESCC | ribonucleoside triphosphate biosynthetic process | 50/8552 | 74/18723 | 1.16e-04 | 8.04e-04 | 50 |
| GO:00062203 | Esophagus | ESCC | pyrimidine nucleotide metabolic process | 35/8552 | 50/18723 | 4.33e-04 | 2.44e-03 | 35 |
| GO:00091473 | Esophagus | ESCC | pyrimidine nucleoside triphosphate metabolic process | 20/8552 | 25/18723 | 4.81e-04 | 2.69e-03 | 20 |
| GO:00091234 | Esophagus | ESCC | nucleoside monophosphate metabolic process | 49/8552 | 76/18723 | 7.30e-04 | 3.80e-03 | 49 |
| GO:00725273 | Esophagus | ESCC | pyrimidine-containing compound metabolic process | 52/8552 | 82/18723 | 9.03e-04 | 4.61e-03 | 52 |
| GO:00091615 | Esophagus | ESCC | ribonucleoside monophosphate metabolic process | 38/8552 | 58/18723 | 1.81e-03 | 8.32e-03 | 38 |
| GO:00091243 | Esophagus | ESCC | nucleoside monophosphate biosynthetic process | 29/8552 | 42/18723 | 1.87e-03 | 8.46e-03 | 29 |
| GO:00091483 | Esophagus | ESCC | pyrimidine nucleoside triphosphate biosynthetic process | 15/8552 | 19/18723 | 3.29e-03 | 1.35e-02 | 15 |
| GO:00091563 | Esophagus | ESCC | ribonucleoside monophosphate biosynthetic process | 23/8552 | 33/18723 | 4.57e-03 | 1.78e-02 | 23 |
| Page: 1 2 3 4 5 |
| Enriched KEGG pathways. |
| Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
| hsa012325 | Esophagus | ESCC | Nucleotide metabolism | 59/4205 | 85/8465 | 1.67e-04 | 6.58e-04 | 3.37e-04 | 59 |
| hsa002405 | Esophagus | ESCC | Pyrimidine metabolism | 41/4205 | 58/8465 | 9.14e-04 | 2.92e-03 | 1.49e-03 | 41 |
| hsa0123212 | Esophagus | ESCC | Nucleotide metabolism | 59/4205 | 85/8465 | 1.67e-04 | 6.58e-04 | 3.37e-04 | 59 |
| hsa0024012 | Esophagus | ESCC | Pyrimidine metabolism | 41/4205 | 58/8465 | 9.14e-04 | 2.92e-03 | 1.49e-03 | 41 |
| hsa002402 | Liver | HCC | Pyrimidine metabolism | 44/4020 | 58/8465 | 9.34e-06 | 7.11e-05 | 3.95e-05 | 44 |
| hsa012322 | Liver | HCC | Nucleotide metabolism | 59/4020 | 85/8465 | 3.30e-05 | 1.88e-04 | 1.04e-04 | 59 |
| hsa009832 | Liver | HCC | Drug metabolism - other enzymes | 54/4020 | 80/8465 | 2.25e-04 | 1.09e-03 | 6.08e-04 | 54 |
| hsa002403 | Liver | HCC | Pyrimidine metabolism | 44/4020 | 58/8465 | 9.34e-06 | 7.11e-05 | 3.95e-05 | 44 |
| hsa012323 | Liver | HCC | Nucleotide metabolism | 59/4020 | 85/8465 | 3.30e-05 | 1.88e-04 | 1.04e-04 | 59 |
| hsa009833 | Liver | HCC | Drug metabolism - other enzymes | 54/4020 | 80/8465 | 2.25e-04 | 1.09e-03 | 6.08e-04 | 54 |
| hsa012324 | Oral cavity | OSCC | Nucleotide metabolism | 54/3704 | 85/8465 | 1.78e-04 | 5.95e-04 | 3.03e-04 | 54 |
| hsa002404 | Oral cavity | OSCC | Pyrimidine metabolism | 37/3704 | 58/8465 | 1.62e-03 | 4.45e-03 | 2.26e-03 | 37 |
| hsa0123211 | Oral cavity | OSCC | Nucleotide metabolism | 54/3704 | 85/8465 | 1.78e-04 | 5.95e-04 | 3.03e-04 | 54 |
| hsa0024011 | Oral cavity | OSCC | Pyrimidine metabolism | 37/3704 | 58/8465 | 1.62e-03 | 4.45e-03 | 2.26e-03 | 37 |
| hsa0123221 | Oral cavity | LP | Nucleotide metabolism | 42/2418 | 85/8465 | 3.62e-05 | 2.36e-04 | 1.52e-04 | 42 |
| hsa0024021 | Oral cavity | LP | Pyrimidine metabolism | 28/2418 | 58/8465 | 1.12e-03 | 5.02e-03 | 3.24e-03 | 28 |
| hsa0123231 | Oral cavity | LP | Nucleotide metabolism | 42/2418 | 85/8465 | 3.62e-05 | 2.36e-04 | 1.52e-04 | 42 |
| hsa0024031 | Oral cavity | LP | Pyrimidine metabolism | 28/2418 | 58/8465 | 1.12e-03 | 5.02e-03 | 3.24e-03 | 28 |
| Page: 1 |
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Cell-cell communication analysis |
| Identification of potential cell-cell interactions between two cell types and their ligand-receptor pairs for different disease states |
| Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
| Page: 1 |
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Single-cell gene regulatory network inference analysis |
| Find out the significant the regulons (TFs) and the target genes of each regulon across cell types for different disease states |
| TF | Cell Type | Tissue | Disease Stage | Target Gene | RSS | Regulon Activity |
| ∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
| Page: 1 |
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Somatic mutation of malignant transformation related genes |
| Annotation of somatic variants for genes involved in malignant transformation |
| Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
| UCK1 | SNV | Missense_Mutation | rs201644764 | c.634N>A | p.Asp212Asn | p.D212N | Q9HA47 | protein_coding | deleterious(0) | possibly_damaging(0.673) | TCGA-AA-3510-01 | Colorectum | colon adenocarcinoma | Male | >=65 | I/II | Unknown | Unknown | SD |
| UCK1 | SNV | Missense_Mutation | rs551698955 | c.496N>A | p.Asp166Asn | p.D166N | Q9HA47 | protein_coding | deleterious(0.02) | probably_damaging(0.991) | TCGA-A5-A0VP-01 | Endometrium | uterine corpus endometrioid carcinoma | Female | >=65 | I/II | Unknown | Unknown | SD |
| UCK1 | SNV | Missense_Mutation | novel | c.475N>A | p.Leu159Met | p.L159M | Q9HA47 | protein_coding | tolerated(1) | benign(0.186) | TCGA-AP-A051-01 | Endometrium | uterine corpus endometrioid carcinoma | Female | >=65 | I/II | Unknown | Unknown | SD |
| UCK1 | SNV | Missense_Mutation | c.458N>C | p.Ile153Thr | p.I153T | Q9HA47 | protein_coding | deleterious(0) | probably_damaging(0.986) | TCGA-AX-A0J1-01 | Endometrium | uterine corpus endometrioid carcinoma | Female | >=65 | I/II | Unknown | Unknown | SD | |
| UCK1 | SNV | Missense_Mutation | rs374240199 | c.764N>A | p.Arg255Gln | p.R255Q | Q9HA47 | protein_coding | tolerated(0.06) | possibly_damaging(0.862) | TCGA-AX-A2HA-01 | Endometrium | uterine corpus endometrioid carcinoma | Female | <65 | I/II | Unknown | Unknown | SD |
| UCK1 | SNV | Missense_Mutation | novel | c.162N>T | p.Gln54His | p.Q54H | Q9HA47 | protein_coding | deleterious(0.02) | probably_damaging(1) | TCGA-AX-A2HC-01 | Endometrium | uterine corpus endometrioid carcinoma | Female | <65 | III/IV | Chemotherapy | paclitaxel | PD |
| UCK1 | SNV | Missense_Mutation | novel | c.449N>A | p.Ser150Asn | p.S150N | Q9HA47 | protein_coding | tolerated(0.59) | benign(0) | TCGA-AX-A2HD-01 | Endometrium | uterine corpus endometrioid carcinoma | Female | >=65 | III/IV | Unknown | Unknown | SD |
| UCK1 | SNV | Missense_Mutation | rs760970141 | c.110N>C | p.Leu37Pro | p.L37P | Q9HA47 | protein_coding | tolerated_low_confidence(0.23) | benign(0.003) | TCGA-B5-A0JN-01 | Endometrium | uterine corpus endometrioid carcinoma | Female | >=65 | III/IV | Chemotherapy | paclitaxel | SD |
| UCK1 | SNV | Missense_Mutation | rs368165696 | c.734N>A | p.Arg245Gln | p.R245Q | Q9HA47 | protein_coding | tolerated(0.08) | possibly_damaging(0.734) | TCGA-B5-A11E-01 | Endometrium | uterine corpus endometrioid carcinoma | Female | <65 | I/II | Unknown | Unknown | SD |
| UCK1 | SNV | Missense_Mutation | novel | c.419T>C | p.Val140Ala | p.V140A | Q9HA47 | protein_coding | deleterious(0) | probably_damaging(0.934) | TCGA-B5-A3FC-01 | Endometrium | uterine corpus endometrioid carcinoma | Female | <65 | I/II | Unknown | Unknown | SD |
| Page: 1 2 3 |
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Related drugs of malignant transformation related genes |
| Identification of chemicals and drugs interact with genes involved in malignant transfromation |
| (DGIdb 4.0) |
| Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
| Page: 1 |
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