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Gene: TNFAIP8L3 |
Gene summary for TNFAIP8L3 |
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Gene information | Species | Human | Gene symbol | TNFAIP8L3 | Gene ID | 388121 |
Gene name | TNF alpha induced protein 8 like 3 | |
Gene Alias | TIPE3 | |
Cytomap | 15q21.2 | |
Gene Type | protein-coding | GO ID | GO:0000165 | UniProtAcc | A0A1B0GTK8 |
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Malignant transformation analysis |
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Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
388121 | TNFAIP8L3 | HCC1 | Human | Liver | HCC | 2.53e-11 | 1.38e+00 | 0.5336 |
388121 | TNFAIP8L3 | HCC2 | Human | Liver | HCC | 1.60e-10 | 8.16e-01 | 0.5341 |
388121 | TNFAIP8L3 | HCC5 | Human | Liver | HCC | 1.47e-12 | 6.00e-01 | 0.4932 |
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Tissue | Expression Dynamics | Abbreviation |
Liver | ![]() | HCC: Hepatocellular carcinoma |
NAFLD: Non-alcoholic fatty liver disease |
∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
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Malignant transformation related pathway analysis |
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Tissue | Disease Stage | Enriched GO biological Processes |
Colorectum | AD | ![]() |
Colorectum | SER | ![]() |
Colorectum | MSS | ![]() |
Colorectum | MSI-H | ![]() |
Colorectum | FAP | ![]() |
∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
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GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
GO:00066444 | Liver | HCC | phospholipid metabolic process | 214/7958 | 383/18723 | 7.25e-08 | 1.48e-06 | 214 |
GO:00192162 | Liver | HCC | regulation of lipid metabolic process | 181/7958 | 331/18723 | 4.58e-06 | 5.79e-05 | 181 |
GO:001087621 | Liver | HCC | lipid localization | 228/7958 | 448/18723 | 1.80e-04 | 1.41e-03 | 228 |
GO:01200092 | Liver | HCC | intermembrane lipid transfer | 33/7958 | 48/18723 | 2.12e-04 | 1.63e-03 | 33 |
GO:003367411 | Liver | HCC | positive regulation of kinase activity | 230/7958 | 467/18723 | 1.72e-03 | 8.95e-03 | 230 |
GO:000686921 | Liver | HCC | lipid transport | 198/7958 | 398/18723 | 1.92e-03 | 9.78e-03 | 198 |
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Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
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Cell-cell communication analysis |
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Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
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Single-cell gene regulatory network inference analysis |
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TF | Cell Type | Tissue | Disease Stage | Target Gene | RSS | Regulon Activity |
∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
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Somatic mutation of malignant transformation related genes |
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Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
TNFAIP8L3 | insertion | Nonsense_Mutation | novel | c.323_324insGGTGTGAAACAATGTCCACTGAGCCTCGCTGGCCATTC | p.Asp108GlufsTer3 | p.D108Efs*3 | Q5GJ75 | protein_coding | TCGA-AO-A0JD-01 | Breast | breast invasive carcinoma | Female | <65 | III/IV | Chemotherapy | cyclophosphamide | SD | ||
TNFAIP8L3 | SNV | Missense_Mutation | c.742N>T | p.Arg248Cys | p.R248C | Q5GJ75 | protein_coding | deleterious(0) | probably_damaging(0.999) | TCGA-2W-A8YY-01 | Cervix | cervical & endocervical cancer | Female | <65 | I/II | Chemotherapy | cisplatin | CR | |
TNFAIP8L3 | SNV | Missense_Mutation | c.494N>G | p.Ile165Ser | p.I165S | Q5GJ75 | protein_coding | deleterious(0) | probably_damaging(0.966) | TCGA-AA-3952-01 | Colorectum | colon adenocarcinoma | Male | >=65 | III/IV | Unknown | Unknown | PD | |
TNFAIP8L3 | SNV | Missense_Mutation | c.769N>A | p.Ala257Thr | p.A257T | Q5GJ75 | protein_coding | tolerated(0.07) | probably_damaging(0.913) | TCGA-D5-6930-01 | Colorectum | colon adenocarcinoma | Male | >=65 | I/II | Unknown | Unknown | SD | |
TNFAIP8L3 | SNV | Missense_Mutation | novel | c.502N>T | p.Asp168Tyr | p.D168Y | Q5GJ75 | protein_coding | deleterious(0.03) | probably_damaging(1) | TCGA-F5-6814-01 | Colorectum | rectum adenocarcinoma | Male | <65 | I/II | Unknown | Unknown | SD |
TNFAIP8L3 | SNV | Missense_Mutation | novel | c.343C>A | p.Leu115Ile | p.L115I | Q5GJ75 | protein_coding | tolerated(0.2) | benign(0.063) | TCGA-AX-A2HC-01 | Endometrium | uterine corpus endometrioid carcinoma | Female | <65 | III/IV | Chemotherapy | paclitaxel | PD |
TNFAIP8L3 | SNV | Missense_Mutation | novel | c.455N>A | p.Thr152Asn | p.T152N | Q5GJ75 | protein_coding | deleterious(0) | possibly_damaging(0.894) | TCGA-EO-A22T-01 | Endometrium | uterine corpus endometrioid carcinoma | Female | <65 | I/II | Unknown | Unknown | SD |
TNFAIP8L3 | SNV | Missense_Mutation | rs768399379 | c.715C>T | p.Arg239Trp | p.R239W | Q5GJ75 | protein_coding | deleterious(0) | probably_damaging(0.987) | TCGA-EO-A22X-01 | Endometrium | uterine corpus endometrioid carcinoma | Female | <65 | III/IV | Unspecific | Carboplatin | Complete Response |
TNFAIP8L3 | SNV | Missense_Mutation | rs762065818 | c.652N>A | p.Asp218Asn | p.D218N | Q5GJ75 | protein_coding | deleterious(0.01) | probably_damaging(0.999) | TCGA-EO-A3AV-01 | Endometrium | uterine corpus endometrioid carcinoma | Female | <65 | III/IV | Chemotherapy | carboplatin | CR |
TNFAIP8L3 | insertion | Nonsense_Mutation | novel | c.434_435insAAAGTCTTAATATTTTGTCTTCTGAGTGTGAGGGGATAAAC | p.Phe145LeufsTer4 | p.F145Lfs*4 | Q5GJ75 | protein_coding | TCGA-BS-A0UM-01 | Endometrium | uterine corpus endometrioid carcinoma | Female | <65 | I/II | Chemotherapy | adriamycin | SD |
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Related drugs of malignant transformation related genes |
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(DGIdb 4.0) |
Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
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