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Gene: TMEM2 |
Gene summary for TMEM2 |
 Gene summary. |
| Gene information | Species | Human | Gene symbol | TMEM2 | Gene ID | 23670 |
| Gene name | cell migration inducing hyaluronidase 2 | |
| Gene Alias | TMEM2 | |
| Cytomap | 9q21.13 | |
| Gene Type | protein-coding | GO ID | GO:0001525 | UniProtAcc | Q9UHN6 |
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Malignant transformation analysis |
| Identification of the aberrant gene expression in precancerous and cancerous lesions by comparing the gene expression of stem-like cells in diseased tissues with normal stem cells |
| Malignant transformation involving gene list. |
| Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
| 23670 | TMEM2 | HTA11_99999970781_79442 | Human | Colorectum | MSS | 1.43e-109 | 1.73e+00 | 0.294 |
| 23670 | TMEM2 | HTA11_99999965062_69753 | Human | Colorectum | MSI-H | 8.49e-22 | 2.28e+00 | 0.3487 |
| 23670 | TMEM2 | HTA11_99999965104_69814 | Human | Colorectum | MSS | 6.31e-46 | 1.34e+00 | 0.281 |
| 23670 | TMEM2 | HTA11_99999971662_82457 | Human | Colorectum | MSS | 1.36e-60 | 1.41e+00 | 0.3859 |
| 23670 | TMEM2 | HTA11_99999973899_84307 | Human | Colorectum | MSS | 1.05e-12 | 4.83e-01 | 0.2585 |
| 23670 | TMEM2 | HTA11_99999974143_84620 | Human | Colorectum | MSS | 6.03e-38 | 6.47e-01 | 0.3005 |
| 23670 | TMEM2 | LZE24T | Human | Esophagus | ESCC | 4.31e-02 | -2.27e-01 | 0.0596 |
| 23670 | TMEM2 | P2T-E | Human | Esophagus | ESCC | 5.65e-14 | 2.10e-01 | 0.1177 |
| 23670 | TMEM2 | P4T-E | Human | Esophagus | ESCC | 9.36e-05 | 1.99e-01 | 0.1323 |
| 23670 | TMEM2 | P8T-E | Human | Esophagus | ESCC | 1.14e-10 | 1.86e-01 | 0.0889 |
| 23670 | TMEM2 | P9T-E | Human | Esophagus | ESCC | 9.44e-09 | 3.50e-01 | 0.1131 |
| 23670 | TMEM2 | P10T-E | Human | Esophagus | ESCC | 2.19e-16 | 1.88e-01 | 0.116 |
| 23670 | TMEM2 | P11T-E | Human | Esophagus | ESCC | 7.26e-13 | 1.02e+00 | 0.1426 |
| 23670 | TMEM2 | P12T-E | Human | Esophagus | ESCC | 2.48e-15 | 5.31e-01 | 0.1122 |
| 23670 | TMEM2 | P15T-E | Human | Esophagus | ESCC | 2.92e-28 | 7.56e-01 | 0.1149 |
| 23670 | TMEM2 | P16T-E | Human | Esophagus | ESCC | 9.05e-12 | 3.04e-01 | 0.1153 |
| 23670 | TMEM2 | P20T-E | Human | Esophagus | ESCC | 9.08e-04 | -1.91e-02 | 0.1124 |
| 23670 | TMEM2 | P21T-E | Human | Esophagus | ESCC | 1.24e-10 | 1.05e-01 | 0.1617 |
| 23670 | TMEM2 | P22T-E | Human | Esophagus | ESCC | 1.20e-08 | 7.13e-02 | 0.1236 |
| 23670 | TMEM2 | P23T-E | Human | Esophagus | ESCC | 3.37e-07 | 3.44e-01 | 0.108 |
| Page: 1 2 3 4 5 |
| Transcriptomic changes along malignancy continuum. |
| Tissue | Expression Dynamics | Abbreviation |
| Colorectum (GSE201348) |  | FAP: Familial adenomatous polyposis |
| CRC: Colorectal cancer | ||
| Colorectum (HTA11) |  | AD: Adenomas |
| SER: Sessile serrated lesions | ||
| MSI-H: Microsatellite-high colorectal cancer | ||
| MSS: Microsatellite stable colorectal cancer | ||
| Esophagus |  | ESCC: Esophageal squamous cell carcinoma |
| HGIN: High-grade intraepithelial neoplasias | ||
| LGIN: Low-grade intraepithelial neoplasias | ||
| Liver |  | HCC: Hepatocellular carcinoma |
| NAFLD: Non-alcoholic fatty liver disease | ||
| Oral Cavity |  | EOLP: Erosive Oral lichen planus |
| LP: leukoplakia | ||
| NEOLP: Non-erosive oral lichen planus | ||
| OSCC: Oral squamous cell carcinoma | ||
| Prostate |  | BPH: Benign Prostatic Hyperplasia |
| ∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
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Malignant transformation related pathway analysis |
| Find out the enriched GO biological processes and KEGG pathways involved in transition from healthy to precancer to cancer |
| Figure of enriched GO biological processes. |
| Tissue | Disease Stage | Enriched GO biological Processes |
| Colorectum | AD |  |
| Colorectum | SER |  |
| Colorectum | MSS |  |
| Colorectum | MSI-H |  |
| Colorectum | FAP |  |
| ∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
| Page: 1 2 3 4 5 6 7 8 9 |
| Enriched GO biological processes. |
| GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
| GO:0016032 | Colorectum | AD | viral process | 168/3918 | 415/18723 | 4.67e-20 | 3.66e-17 | 168 |
| GO:0048524 | Colorectum | AD | positive regulation of viral process | 31/3918 | 65/18723 | 1.33e-06 | 4.23e-05 | 31 |
| GO:0050792 | Colorectum | AD | regulation of viral process | 59/3918 | 164/18723 | 5.95e-06 | 1.52e-04 | 59 |
| GO:0000910 | Colorectum | AD | cytokinesis | 59/3918 | 173/18723 | 3.74e-05 | 6.75e-04 | 59 |
| GO:0061640 | Colorectum | AD | cytoskeleton-dependent cytokinesis | 37/3918 | 100/18723 | 1.58e-04 | 2.20e-03 | 37 |
| GO:0051604 | Colorectum | AD | protein maturation | 85/3918 | 294/18723 | 6.73e-04 | 6.91e-03 | 85 |
| GO:0006487 | Colorectum | AD | protein N-linked glycosylation | 25/3918 | 65/18723 | 9.12e-04 | 8.71e-03 | 25 |
| GO:0006486 | Colorectum | AD | protein glycosylation | 64/3918 | 226/18723 | 4.86e-03 | 3.27e-02 | 64 |
| GO:0043413 | Colorectum | AD | macromolecule glycosylation | 64/3918 | 226/18723 | 4.86e-03 | 3.27e-02 | 64 |
| GO:0070085 | Colorectum | AD | glycosylation | 67/3918 | 240/18723 | 5.78e-03 | 3.67e-02 | 67 |
| GO:0016485 | Colorectum | AD | protein processing | 63/3918 | 225/18723 | 6.77e-03 | 4.19e-02 | 63 |
| GO:00160321 | Colorectum | SER | viral process | 118/2897 | 415/18723 | 8.36e-12 | 1.65e-09 | 118 |
| GO:00516041 | Colorectum | SER | protein maturation | 73/2897 | 294/18723 | 1.82e-05 | 5.38e-04 | 73 |
| GO:00009101 | Colorectum | SER | cytokinesis | 45/2897 | 173/18723 | 2.28e-04 | 3.93e-03 | 45 |
| GO:00507921 | Colorectum | SER | regulation of viral process | 43/2897 | 164/18723 | 2.57e-04 | 4.31e-03 | 43 |
| GO:00164851 | Colorectum | SER | protein processing | 55/2897 | 225/18723 | 2.84e-04 | 4.67e-03 | 55 |
| GO:00616401 | Colorectum | SER | cytoskeleton-dependent cytokinesis | 29/2897 | 100/18723 | 4.25e-04 | 6.25e-03 | 29 |
| GO:00485241 | Colorectum | SER | positive regulation of viral process | 21/2897 | 65/18723 | 5.39e-04 | 7.57e-03 | 21 |
| GO:00064871 | Colorectum | MSS | protein N-linked glycosylation | 23/3467 | 65/18723 | 9.47e-04 | 9.54e-03 | 23 |
| GO:00516042 | Colorectum | MSS | protein maturation | 75/3467 | 294/18723 | 1.70e-03 | 1.53e-02 | 75 |
| Page: 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 |
| Enriched KEGG pathways. |
| Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
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Cell-cell communication analysis |
| Identification of potential cell-cell interactions between two cell types and their ligand-receptor pairs for different disease states |
| Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
| Page: 1 |
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Single-cell gene regulatory network inference analysis |
| Find out the significant the regulons (TFs) and the target genes of each regulon across cell types for different disease states |
| TF | Cell Type | Tissue | Disease Stage | Target Gene | RSS | Regulon Activity |
| ∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
| Page: 1 |
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Somatic mutation of malignant transformation related genes |
| Annotation of somatic variants for genes involved in malignant transformation |
| Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
| TMEM2 | SNV | Missense_Mutation | novel | c.3527G>A | p.Arg1176Lys | p.R1176K | Q9UHN6 | protein_coding | tolerated(0.66) | benign(0) | TCGA-A8-A06Q-01 | Breast | breast invasive carcinoma | Female | <65 | III/IV | Unknown | Unknown | SD |
| TMEM2 | SNV | Missense_Mutation | novel | c.3357N>A | p.Phe1119Leu | p.F1119L | Q9UHN6 | protein_coding | deleterious(0.03) | possibly_damaging(0.49) | TCGA-AN-A046-01 | Breast | breast invasive carcinoma | Female | >=65 | I/II | Unknown | Unknown | SD |
| TMEM2 | SNV | Missense_Mutation | c.1139N>G | p.Gln380Arg | p.Q380R | Q9UHN6 | protein_coding | tolerated(0.68) | benign(0.001) | TCGA-AR-A0TX-01 | Breast | breast invasive carcinoma | Female | <65 | I/II | Unknown | Unknown | SD | |
| TMEM2 | insertion | Nonsense_Mutation | novel | c.922_923insCTGAATCTGTGGGATCTACTAAAGTTTA | p.Arg308ProfsTer10 | p.R308Pfs*10 | Q9UHN6 | protein_coding | TCGA-AO-A0JF-01 | Breast | breast invasive carcinoma | Female | >=65 | I/II | Chemotherapy | doxorubicin | SD | ||
| TMEM2 | SNV | Missense_Mutation | novel | c.3854N>T | p.Ser1285Phe | p.S1285F | Q9UHN6 | protein_coding | deleterious(0.01) | probably_damaging(0.996) | TCGA-2W-A8YY-01 | Cervix | cervical & endocervical cancer | Female | <65 | I/II | Chemotherapy | cisplatin | CR |
| TMEM2 | SNV | Missense_Mutation | rs772803934 | c.1469N>A | p.Arg490Gln | p.R490Q | Q9UHN6 | protein_coding | deleterious(0.03) | benign(0.264) | TCGA-2W-A8YY-01 | Cervix | cervical & endocervical cancer | Female | <65 | I/II | Chemotherapy | cisplatin | CR |
| TMEM2 | SNV | Missense_Mutation | c.415N>T | p.Asp139Tyr | p.D139Y | Q9UHN6 | protein_coding | tolerated(0.07) | possibly_damaging(0.87) | TCGA-2W-A8YY-01 | Cervix | cervical & endocervical cancer | Female | <65 | I/II | Chemotherapy | cisplatin | CR | |
| TMEM2 | SNV | Missense_Mutation | novel | c.1885N>G | p.Thr629Ala | p.T629A | Q9UHN6 | protein_coding | deleterious(0.05) | benign(0.083) | TCGA-EA-A410-01 | Cervix | cervical & endocervical cancer | Female | <65 | I/II | Unknown | Unknown | SD |
| TMEM2 | SNV | Missense_Mutation | rs776808520 | c.314C>T | p.Ser105Leu | p.S105L | Q9UHN6 | protein_coding | deleterious(0) | benign(0.03) | TCGA-FU-A3HY-01 | Cervix | cervical & endocervical cancer | Female | <65 | I/II | Chemotherapy | cisplatin | CR |
| TMEM2 | SNV | Missense_Mutation | c.2635C>T | p.His879Tyr | p.H879Y | Q9UHN6 | protein_coding | tolerated(1) | benign(0.171) | TCGA-JW-A5VL-01 | Cervix | cervical & endocervical cancer | Female | <65 | I/II | Unknown | Unknown | SD |
| Page: 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 |
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Related drugs of malignant transformation related genes |
| Identification of chemicals and drugs interact with genes involved in malignant transfromation |
| (DGIdb 4.0) |
| Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
| Page: 1 |
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