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Gene: SNHG1 |
Gene summary for SNHG1 |
 Gene summary. |
| Gene information | Species | Human | Gene symbol | SNHG1 | Gene ID | 23642 |
| Gene name | small nucleolar RNA host gene 1 | |
| Gene Alias | LINC00057 | |
| Cytomap | 11q12.3 | |
| Gene Type | ncRNA | GO ID | GO:0006139 | UniProtAcc | NA |
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Malignant transformation analysis |
| Identification of the aberrant gene expression in precancerous and cancerous lesions by comparing the gene expression of stem-like cells in diseased tissues with normal stem cells |
| Malignant transformation involving gene list. |
| Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
| 23642 | SNHG1 | HTA11_1938_2000001011 | Human | Colorectum | AD | 1.73e-09 | 3.19e-01 | -0.0811 |
| 23642 | SNHG1 | HTA11_78_2000001011 | Human | Colorectum | AD | 8.02e-08 | 2.56e-01 | -0.1088 |
| 23642 | SNHG1 | HTA11_347_2000001011 | Human | Colorectum | AD | 1.69e-05 | 1.32e-01 | -0.1954 |
| 23642 | SNHG1 | HTA11_3361_2000001011 | Human | Colorectum | AD | 5.46e-03 | 2.02e-01 | -0.1207 |
| 23642 | SNHG1 | HTA11_696_2000001011 | Human | Colorectum | AD | 8.62e-04 | 1.06e-01 | -0.1464 |
| 23642 | SNHG1 | HTA11_1391_2000001011 | Human | Colorectum | AD | 1.37e-03 | 1.37e-01 | -0.059 |
| 23642 | SNHG1 | HTA11_546_2000001011 | Human | Colorectum | AD | 7.78e-03 | 1.52e-01 | -0.0842 |
| 23642 | SNHG1 | HTA11_866_3004761011 | Human | Colorectum | AD | 3.51e-07 | 2.00e-01 | 0.096 |
| 23642 | SNHG1 | HTA11_4255_2000001011 | Human | Colorectum | SER | 3.40e-02 | 1.93e-01 | 0.0446 |
| 23642 | SNHG1 | HTA11_8622_2000001021 | Human | Colorectum | SER | 8.37e-05 | 2.67e-01 | 0.0528 |
| 23642 | SNHG1 | HTA11_6801_2000001011 | Human | Colorectum | SER | 1.85e-04 | 3.29e-01 | 0.0171 |
| 23642 | SNHG1 | HTA11_10711_2000001011 | Human | Colorectum | AD | 3.52e-05 | 1.83e-01 | 0.0338 |
| 23642 | SNHG1 | HTA11_7696_3000711011 | Human | Colorectum | AD | 2.83e-15 | 3.05e-01 | 0.0674 |
| 23642 | SNHG1 | HTA11_99999970781_79442 | Human | Colorectum | MSS | 5.40e-44 | 7.90e-01 | 0.294 |
| 23642 | SNHG1 | HTA11_99999965104_69814 | Human | Colorectum | MSS | 3.86e-11 | 3.40e-01 | 0.281 |
| 23642 | SNHG1 | HTA11_99999971662_82457 | Human | Colorectum | MSS | 8.80e-32 | 6.93e-01 | 0.3859 |
| 23642 | SNHG1 | HTA11_99999974143_84620 | Human | Colorectum | MSS | 2.00e-05 | 1.70e-01 | 0.3005 |
| 23642 | SNHG1 | LZE2T | Human | Esophagus | ESCC | 1.99e-02 | 8.35e-01 | 0.082 |
| 23642 | SNHG1 | LZE4T | Human | Esophagus | ESCC | 3.77e-06 | 4.56e-01 | 0.0811 |
| 23642 | SNHG1 | LZE7T | Human | Esophagus | ESCC | 5.16e-15 | 1.03e+00 | 0.0667 |
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| Transcriptomic changes along malignancy continuum. |
| Tissue | Expression Dynamics | Abbreviation |
| Colorectum (GSE201348) |  | FAP: Familial adenomatous polyposis |
| CRC: Colorectal cancer | ||
| Colorectum (HTA11) |  | AD: Adenomas |
| SER: Sessile serrated lesions | ||
| MSI-H: Microsatellite-high colorectal cancer | ||
| MSS: Microsatellite stable colorectal cancer | ||
| Esophagus |  | ESCC: Esophageal squamous cell carcinoma |
| HGIN: High-grade intraepithelial neoplasias | ||
| LGIN: Low-grade intraepithelial neoplasias | ||
| Liver |  | HCC: Hepatocellular carcinoma |
| NAFLD: Non-alcoholic fatty liver disease |
| ∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
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Malignant transformation related pathway analysis |
| Find out the enriched GO biological processes and KEGG pathways involved in transition from healthy to precancer to cancer |
| Figure of enriched GO biological processes. |
| Tissue | Disease Stage | Enriched GO biological Processes |
| Colorectum | AD |  |
| Colorectum | SER |  |
| Colorectum | MSS |  |
| Colorectum | MSI-H |  |
| Colorectum | FAP |  |
| ∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
| Page: 1 2 3 4 5 6 7 8 9 |
| Enriched GO biological processes. |
| GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
| Page: 1 |
| Enriched KEGG pathways. |
| Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
| Page: 1 |
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Cell-cell communication analysis |
| Identification of potential cell-cell interactions between two cell types and their ligand-receptor pairs for different disease states |
| Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
| Page: 1 |
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Single-cell gene regulatory network inference analysis |
| Find out the significant the regulons (TFs) and the target genes of each regulon across cell types for different disease states |
| TF | Cell Type | Tissue | Disease Stage | Target Gene | RSS | Regulon Activity |
| ∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
| Page: 1 |
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Somatic mutation of malignant transformation related genes |
| Annotation of somatic variants for genes involved in malignant transformation |
| Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
| Page: 1 |
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Related drugs of malignant transformation related genes |
| Identification of chemicals and drugs interact with genes involved in malignant transfromation |
| (DGIdb 4.0) |
| Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
| Page: 1 |
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