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Gene: SGK223 |
Gene summary for SGK223 |
Gene summary. |
Gene information | Species | Human | Gene symbol | SGK223 | Gene ID | 157285 |
Gene name | PEAK1 related, kinase-activating pseudokinase 1 | |
Gene Alias | NACK | |
Cytomap | 8p23.1 | |
Gene Type | protein-coding | GO ID | GO:0000902 | UniProtAcc | Q86YV5 |
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Malignant transformation analysis |
Identification of the aberrant gene expression in precancerous and cancerous lesions by comparing the gene expression of stem-like cells in diseased tissues with normal stem cells |
Malignant transformation involving gene list. |
Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
157285 | SGK223 | HTA11_99999970781_79442 | Human | Colorectum | MSS | 1.92e-04 | 1.71e-01 | 0.294 |
157285 | SGK223 | HTA11_99999965062_69753 | Human | Colorectum | MSI-H | 1.40e-05 | 5.85e-01 | 0.3487 |
157285 | SGK223 | HTA11_99999971662_82457 | Human | Colorectum | MSS | 3.52e-13 | 3.23e-01 | 0.3859 |
157285 | SGK223 | HTA11_99999973899_84307 | Human | Colorectum | MSS | 1.02e-09 | 3.48e-01 | 0.2585 |
157285 | SGK223 | HTA11_99999974143_84620 | Human | Colorectum | MSS | 3.23e-39 | 7.66e-01 | 0.3005 |
157285 | SGK223 | P1T-E | Human | Esophagus | ESCC | 4.13e-04 | 2.25e-01 | 0.0875 |
157285 | SGK223 | P2T-E | Human | Esophagus | ESCC | 1.75e-07 | 1.08e-01 | 0.1177 |
157285 | SGK223 | P4T-E | Human | Esophagus | ESCC | 5.32e-04 | 6.98e-02 | 0.1323 |
157285 | SGK223 | P5T-E | Human | Esophagus | ESCC | 1.79e-05 | 1.00e-01 | 0.1327 |
157285 | SGK223 | P8T-E | Human | Esophagus | ESCC | 9.00e-10 | 1.90e-01 | 0.0889 |
157285 | SGK223 | P9T-E | Human | Esophagus | ESCC | 3.58e-05 | 1.43e-01 | 0.1131 |
157285 | SGK223 | P10T-E | Human | Esophagus | ESCC | 1.53e-15 | 3.02e-01 | 0.116 |
157285 | SGK223 | P12T-E | Human | Esophagus | ESCC | 3.56e-15 | 3.13e-01 | 0.1122 |
157285 | SGK223 | P15T-E | Human | Esophagus | ESCC | 3.35e-08 | 1.56e-01 | 0.1149 |
157285 | SGK223 | P20T-E | Human | Esophagus | ESCC | 5.31e-12 | 1.62e-01 | 0.1124 |
157285 | SGK223 | P21T-E | Human | Esophagus | ESCC | 8.44e-08 | 1.52e-01 | 0.1617 |
157285 | SGK223 | P22T-E | Human | Esophagus | ESCC | 2.50e-03 | 1.09e-01 | 0.1236 |
157285 | SGK223 | P23T-E | Human | Esophagus | ESCC | 4.64e-05 | 4.30e-02 | 0.108 |
157285 | SGK223 | P24T-E | Human | Esophagus | ESCC | 2.89e-03 | 3.96e-02 | 0.1287 |
157285 | SGK223 | P26T-E | Human | Esophagus | ESCC | 1.27e-05 | 1.03e-01 | 0.1276 |
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Transcriptomic changes along malignancy continuum. |
∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
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Malignant transformation related pathway analysis |
Find out the enriched GO biological processes and KEGG pathways involved in transition from healthy to precancer to cancer |
Figure of enriched GO biological processes. |
Tissue | Disease Stage | Enriched GO biological Processes |
Colorectum | AD | |
Colorectum | SER | |
Colorectum | MSS | |
Colorectum | MSI-H | |
Colorectum | FAP |
∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
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Enriched GO biological processes. |
GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
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Enriched KEGG pathways. |
Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
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Cell-cell communication analysis |
Identification of potential cell-cell interactions between two cell types and their ligand-receptor pairs for different disease states |
Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
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Single-cell gene regulatory network inference analysis |
Find out the significant the regulons (TFs) and the target genes of each regulon across cell types for different disease states |
TF | Cell Type | Tissue | Disease Stage | Target Gene | RSS | Regulon Activity |
∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
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Somatic mutation of malignant transformation related genes |
Annotation of somatic variants for genes involved in malignant transformation |
Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
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Related drugs of malignant transformation related genes |
Identification of chemicals and drugs interact with genes involved in malignant transfromation |
(DGIdb 4.0) |
Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
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