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Gene: SELENOK |
Gene summary for SELENOK |
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Gene information | Species | Human | Gene symbol | SELENOK | Gene ID | 58515 |
Gene name | selenoprotein K | |
Gene Alias | HSPC030 | |
Cytomap | 3p21.1 | |
Gene Type | protein-coding | GO ID | GO:0001775 | UniProtAcc | Q9Y6D0 |
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Malignant transformation analysis |
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Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
58515 | SELENOK | GSM4909281 | Human | Breast | IDC | 5.58e-16 | 5.46e-01 | 0.21 |
58515 | SELENOK | GSM4909285 | Human | Breast | IDC | 4.55e-05 | 1.21e-01 | 0.21 |
58515 | SELENOK | GSM4909286 | Human | Breast | IDC | 1.45e-15 | 1.67e-01 | 0.1081 |
58515 | SELENOK | GSM4909290 | Human | Breast | IDC | 7.34e-11 | 3.76e-01 | 0.2096 |
58515 | SELENOK | GSM4909298 | Human | Breast | IDC | 1.90e-14 | 3.08e-01 | 0.1551 |
58515 | SELENOK | GSM4909299 | Human | Breast | IDC | 2.07e-04 | 3.12e-01 | 0.035 |
58515 | SELENOK | GSM4909300 | Human | Breast | IDC | 1.95e-02 | 3.29e-01 | 0.0334 |
58515 | SELENOK | GSM4909301 | Human | Breast | IDC | 5.13e-07 | 4.32e-01 | 0.1577 |
58515 | SELENOK | GSM4909305 | Human | Breast | IDC | 7.03e-07 | 2.18e-01 | 0.0436 |
58515 | SELENOK | GSM4909306 | Human | Breast | IDC | 3.92e-03 | 1.26e-01 | 0.1564 |
58515 | SELENOK | GSM4909308 | Human | Breast | IDC | 5.67e-15 | 2.86e-01 | 0.158 |
58515 | SELENOK | GSM4909311 | Human | Breast | IDC | 3.21e-13 | -1.64e-01 | 0.1534 |
58515 | SELENOK | GSM4909319 | Human | Breast | IDC | 8.35e-20 | -6.02e-02 | 0.1563 |
58515 | SELENOK | ctrl6 | Human | Breast | Precancer | 3.22e-20 | 7.21e-01 | -0.0061 |
58515 | SELENOK | brca1 | Human | Breast | Precancer | 1.06e-23 | -4.89e-01 | -0.0338 |
58515 | SELENOK | brca2 | Human | Breast | Precancer | 2.31e-20 | -4.89e-01 | -0.024 |
58515 | SELENOK | brca3 | Human | Breast | Precancer | 2.31e-20 | -4.89e-01 | -0.0263 |
58515 | SELENOK | brca10 | Human | Breast | Precancer | 2.97e-32 | 8.18e-01 | -0.0029 |
58515 | SELENOK | brca11 | Human | Breast | Precancer | 2.81e-02 | 6.74e-01 | 0.0193 |
58515 | SELENOK | M1 | Human | Breast | IDC | 1.90e-02 | 1.22e-01 | 0.1577 |
Page: 1 2 3 4 5 6 7 8 9 10 |
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∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
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Malignant transformation related pathway analysis |
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Tissue | Disease Stage | Enriched GO biological Processes |
Colorectum | AD | ![]() |
Colorectum | SER | ![]() |
Colorectum | MSS | ![]() |
Colorectum | MSI-H | ![]() |
Colorectum | FAP | ![]() |
∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
Page: 1 2 3 4 5 6 7 8 9 |
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GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
GO:00971939 | Breast | Precancer | intrinsic apoptotic signaling pathway | 59/1080 | 288/18723 | 8.07e-18 | 3.60e-15 | 59 |
GO:00069799 | Breast | Precancer | response to oxidative stress | 70/1080 | 446/18723 | 1.59e-14 | 4.26e-12 | 70 |
GO:00349769 | Breast | Precancer | response to endoplasmic reticulum stress | 38/1080 | 256/18723 | 7.89e-08 | 4.60e-06 | 38 |
GO:00509006 | Breast | Precancer | leukocyte migration | 47/1080 | 369/18723 | 2.82e-07 | 1.39e-05 | 47 |
GO:00457859 | Breast | Precancer | positive regulation of cell adhesion | 52/1080 | 437/18723 | 5.74e-07 | 2.49e-05 | 52 |
GO:00018196 | Breast | Precancer | positive regulation of cytokine production | 52/1080 | 467/18723 | 4.18e-06 | 1.29e-04 | 52 |
GO:00421107 | Breast | Precancer | T cell activation | 52/1080 | 487/18723 | 1.37e-05 | 3.42e-04 | 52 |
GO:00508707 | Breast | Precancer | positive regulation of T cell activation | 29/1080 | 216/18723 | 1.94e-05 | 4.58e-04 | 29 |
GO:19030396 | Breast | Precancer | positive regulation of leukocyte cell-cell adhesion | 30/1080 | 239/18723 | 5.13e-05 | 1.07e-03 | 30 |
GO:00026856 | Breast | Precancer | regulation of leukocyte migration | 27/1080 | 210/18723 | 7.93e-05 | 1.54e-03 | 27 |
GO:00508637 | Breast | Precancer | regulation of T cell activation | 37/1080 | 329/18723 | 8.04e-05 | 1.56e-03 | 37 |
GO:00224098 | Breast | Precancer | positive regulation of cell-cell adhesion | 33/1080 | 284/18723 | 1.03e-04 | 1.89e-03 | 33 |
GO:00071597 | Breast | Precancer | leukocyte cell-cell adhesion | 40/1080 | 371/18723 | 1.07e-04 | 1.94e-03 | 40 |
GO:00457305 | Breast | Precancer | respiratory burst | 9/1080 | 37/18723 | 1.96e-04 | 3.10e-03 | 9 |
GO:00224079 | Breast | Precancer | regulation of cell-cell adhesion | 45/1080 | 448/18723 | 2.12e-04 | 3.30e-03 | 45 |
GO:00700598 | Breast | Precancer | intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress | 12/1080 | 63/18723 | 2.21e-04 | 3.37e-03 | 12 |
GO:19030377 | Breast | Precancer | regulation of leukocyte cell-cell adhesion | 36/1080 | 336/18723 | 2.61e-04 | 3.84e-03 | 36 |
GO:00716744 | Breast | Precancer | mononuclear cell migration | 24/1080 | 196/18723 | 4.03e-04 | 5.44e-03 | 24 |
GO:00026877 | Breast | Precancer | positive regulation of leukocyte migration | 18/1080 | 135/18723 | 7.60e-04 | 9.04e-03 | 18 |
GO:00716774 | Breast | Precancer | positive regulation of mononuclear cell migration | 11/1080 | 65/18723 | 1.13e-03 | 1.25e-02 | 11 |
Page: 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 |
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Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
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Cell-cell communication analysis |
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Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
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Single-cell gene regulatory network inference analysis |
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TF | Cell Type | Tissue | Disease Stage | Target Gene | RSS | Regulon Activity |
∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
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Somatic mutation of malignant transformation related genes |
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Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
SELENOK | SNV | Missense_Mutation | c.14N>G | p.Ser5Trp | p.S5W | protein_coding | deleterious(0) | possibly_damaging(0.829) | TCGA-AC-A23H-01 | Breast | breast invasive carcinoma | Female | >=65 | I/II | Unknown | Unknown | PD | ||
SELENOK | SNV | Missense_Mutation | c.149N>A | p.Arg50Lys | p.R50K | protein_coding | tolerated(0.48) | benign(0.026) | TCGA-EK-A2RJ-01 | Cervix | cervical & endocervical cancer | Female | <65 | I/II | Unknown | Unknown | SD | ||
SELENOK | SNV | Missense_Mutation | c.245N>A | p.Gly82Asp | p.G82D | protein_coding | deleterious(0.01) | probably_damaging(0.999) | TCGA-WS-AB45-01 | Colorectum | colon adenocarcinoma | Female | <65 | I/II | Unknown | Unknown | SD | ||
SELENOK | deletion | Frame_Shift_Del | novel | c.145delA | p.Arg49GlufsTer51 | p.R49Efs*51 | protein_coding | TCGA-5M-AAT6-01 | Colorectum | colon adenocarcinoma | Female | <65 | III/IV | Unknown | Unknown | PD | |||
SELENOK | SNV | Missense_Mutation | c.81N>A | p.Phe27Leu | p.F27L | protein_coding | deleterious(0.02) | probably_damaging(0.973) | TCGA-AP-A059-01 | Endometrium | uterine corpus endometrioid carcinoma | Female | >=65 | I/II | Unknown | Unknown | SD | ||
SELENOK | SNV | Missense_Mutation | rs376660375 | c.241N>T | p.Arg81Cys | p.R81C | protein_coding | deleterious(0.04) | benign(0.192) | TCGA-BG-A220-01 | Endometrium | uterine corpus endometrioid carcinoma | Female | >=65 | I/II | Unknown | Unknown | SD | |
SELENOK | deletion | Frame_Shift_Del | novel | c.145delN | p.Arg49GlufsTer51 | p.R49Efs*51 | protein_coding | TCGA-AX-A1CE-01 | Endometrium | uterine corpus endometrioid carcinoma | Female | <65 | I/II | Unspecific | Paclitaxel | SD |
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Related drugs of malignant transformation related genes |
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(DGIdb 4.0) |
Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
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