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Gene: RPL3P4 |
Gene summary for RPL3P4 |
Gene summary. |
Gene information | Species | Human | Gene symbol | RPL3P4 | Gene ID | 326307 |
Gene name | ribosomal protein L3 pseudogene 4 | |
Gene Alias | RPL3P4 | |
Cytomap | 14q32.2 | |
Gene Type | pseudo | GO ID | NA | UniProtAcc | NA |
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Malignant transformation analysis |
Identification of the aberrant gene expression in precancerous and cancerous lesions by comparing the gene expression of stem-like cells in diseased tissues with normal stem cells |
Malignant transformation involving gene list. |
Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
326307 | RPL3P4 | Adj_PTCwithHT_6 | Human | Thyroid | HT | 1.01e-14 | 5.09e-01 | 0.02 |
326307 | RPL3P4 | PTCwithoutHT_2 | Human | Thyroid | PTC | 2.63e-02 | -4.45e-02 | 0.0419 |
326307 | RPL3P4 | male-WTA | Human | Thyroid | PTC | 4.56e-62 | 2.30e-01 | 0.1037 |
326307 | RPL3P4 | PTC01 | Human | Thyroid | PTC | 5.37e-18 | -7.09e-01 | 0.1899 |
326307 | RPL3P4 | PTC03 | Human | Thyroid | PTC | 3.84e-07 | -7.09e-01 | 0.1784 |
326307 | RPL3P4 | PTC04 | Human | Thyroid | PTC | 1.45e-16 | -7.09e-01 | 0.1927 |
326307 | RPL3P4 | PTC05 | Human | Thyroid | PTC | 1.85e-07 | -7.09e-01 | 0.2065 |
326307 | RPL3P4 | PTC06 | Human | Thyroid | PTC | 9.05e-16 | -7.09e-01 | 0.2057 |
326307 | RPL3P4 | PTC07 | Human | Thyroid | PTC | 2.34e-18 | -7.09e-01 | 0.2044 |
326307 | RPL3P4 | ATC08 | Human | Thyroid | ATC | 1.03e-06 | -7.09e-01 | 0.0541 |
326307 | RPL3P4 | ATC09 | Human | Thyroid | ATC | 8.95e-08 | -7.09e-01 | 0.2871 |
326307 | RPL3P4 | ATC12 | Human | Thyroid | ATC | 1.92e-19 | -7.09e-01 | 0.34 |
326307 | RPL3P4 | ATC13 | Human | Thyroid | ATC | 1.23e-17 | -7.09e-01 | 0.34 |
326307 | RPL3P4 | ATC1 | Human | Thyroid | ATC | 2.78e-06 | -7.09e-01 | 0.2878 |
326307 | RPL3P4 | ATC3 | Human | Thyroid | ATC | 3.11e-02 | -7.09e-01 | 0.338 |
326307 | RPL3P4 | ATC4 | Human | Thyroid | ATC | 2.71e-22 | -7.09e-01 | 0.34 |
326307 | RPL3P4 | ATC5 | Human | Thyroid | ATC | 1.23e-17 | -7.09e-01 | 0.34 |
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Transcriptomic changes along malignancy continuum. |
Tissue | Expression Dynamics | Abbreviation |
Thyroid | ATC: Anaplastic thyroid cancer | |
HT: Hashimoto's thyroiditis | ||
PTC: Papillary thyroid cancer |
∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
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Malignant transformation related pathway analysis |
Find out the enriched GO biological processes and KEGG pathways involved in transition from healthy to precancer to cancer |
Figure of enriched GO biological processes. |
Tissue | Disease Stage | Enriched GO biological Processes |
Colorectum | AD | |
Colorectum | SER | |
Colorectum | MSS | |
Colorectum | MSI-H | |
Colorectum | FAP |
∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
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Enriched GO biological processes. |
GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
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Enriched KEGG pathways. |
Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
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Cell-cell communication analysis |
Identification of potential cell-cell interactions between two cell types and their ligand-receptor pairs for different disease states |
Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
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Single-cell gene regulatory network inference analysis |
Find out the significant the regulons (TFs) and the target genes of each regulon across cell types for different disease states |
TF | Cell Type | Tissue | Disease Stage | Target Gene | RSS | Regulon Activity |
∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
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Somatic mutation of malignant transformation related genes |
Annotation of somatic variants for genes involved in malignant transformation |
Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
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Related drugs of malignant transformation related genes |
Identification of chemicals and drugs interact with genes involved in malignant transfromation |
(DGIdb 4.0) |
Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
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