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Gene: POLE4 |
Gene summary for POLE4 |
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Gene information | Species | Human | Gene symbol | POLE4 | Gene ID | 56655 |
Gene name | DNA polymerase epsilon 4, accessory subunit | |
Gene Alias | YHHQ1 | |
Cytomap | 2p12 | |
Gene Type | protein-coding | GO ID | GO:0006139 | UniProtAcc | Q9NR33 |
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Malignant transformation analysis |
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Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
56655 | POLE4 | HTA11_2487_2000001011 | Human | Colorectum | SER | 4.76e-04 | 1.92e-01 | -0.1808 |
56655 | POLE4 | HTA11_1938_2000001011 | Human | Colorectum | AD | 3.59e-07 | 3.42e-01 | -0.0811 |
56655 | POLE4 | HTA11_347_2000001011 | Human | Colorectum | AD | 3.77e-09 | 2.37e-01 | -0.1954 |
56655 | POLE4 | HTA11_411_2000001011 | Human | Colorectum | SER | 4.02e-03 | 3.54e-01 | -0.2602 |
56655 | POLE4 | HTA11_3361_2000001011 | Human | Colorectum | AD | 1.74e-03 | 2.18e-01 | -0.1207 |
56655 | POLE4 | HTA11_83_2000001011 | Human | Colorectum | SER | 4.54e-08 | 3.58e-01 | -0.1526 |
56655 | POLE4 | HTA11_696_2000001011 | Human | Colorectum | AD | 1.26e-03 | 2.34e-01 | -0.1464 |
56655 | POLE4 | HTA11_1391_2000001011 | Human | Colorectum | AD | 1.07e-08 | 2.99e-01 | -0.059 |
56655 | POLE4 | HTA11_2992_2000001011 | Human | Colorectum | SER | 5.70e-03 | 2.84e-01 | -0.1706 |
56655 | POLE4 | HTA11_546_2000001011 | Human | Colorectum | AD | 7.09e-05 | 3.11e-01 | -0.0842 |
56655 | POLE4 | HTA11_866_3004761011 | Human | Colorectum | AD | 1.77e-03 | 1.56e-01 | 0.096 |
56655 | POLE4 | HTA11_7696_3000711011 | Human | Colorectum | AD | 1.61e-02 | 2.09e-01 | 0.0674 |
56655 | POLE4 | HTA11_6818_2000001021 | Human | Colorectum | AD | 1.03e-02 | 1.69e-01 | 0.0588 |
56655 | POLE4 | HTA11_99999970781_79442 | Human | Colorectum | MSS | 1.74e-03 | 2.24e-01 | 0.294 |
56655 | POLE4 | HTA11_99999973899_84307 | Human | Colorectum | MSS | 1.84e-02 | 3.11e-01 | 0.2585 |
56655 | POLE4 | HTA11_99999974143_84620 | Human | Colorectum | MSS | 2.79e-06 | 2.65e-01 | 0.3005 |
56655 | POLE4 | LZE2D | Human | Esophagus | HGIN | 1.27e-02 | 4.47e-01 | 0.0642 |
56655 | POLE4 | LZE2T | Human | Esophagus | ESCC | 3.22e-03 | 9.46e-01 | 0.082 |
56655 | POLE4 | LZE4T | Human | Esophagus | ESCC | 5.23e-17 | 4.52e-01 | 0.0811 |
56655 | POLE4 | LZE5T | Human | Esophagus | ESCC | 1.54e-03 | 4.67e-01 | 0.0514 |
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∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
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Malignant transformation related pathway analysis |
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Tissue | Disease Stage | Enriched GO biological Processes |
Colorectum | AD | ![]() |
Colorectum | SER | ![]() |
Colorectum | MSS | ![]() |
Colorectum | MSI-H | ![]() |
Colorectum | FAP | ![]() |
∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
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GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
GO:0071897 | Colorectum | AD | DNA biosynthetic process | 55/3918 | 180/18723 | 1.46e-03 | 1.24e-02 | 55 |
GO:00718971 | Colorectum | SER | DNA biosynthetic process | 43/2897 | 180/18723 | 1.99e-03 | 1.98e-02 | 43 |
GO:00718972 | Colorectum | MSS | DNA biosynthetic process | 50/3467 | 180/18723 | 1.45e-03 | 1.35e-02 | 50 |
GO:007189710 | Esophagus | HGIN | DNA biosynthetic process | 44/2587 | 180/18723 | 8.97e-05 | 1.96e-03 | 44 |
GO:007189716 | Esophagus | ESCC | DNA biosynthetic process | 127/8552 | 180/18723 | 1.04e-11 | 3.85e-10 | 127 |
GO:00718975 | Liver | HCC | DNA biosynthetic process | 99/7958 | 180/18723 | 4.66e-04 | 3.08e-03 | 99 |
GO:00718979 | Oral cavity | OSCC | DNA biosynthetic process | 106/7305 | 180/18723 | 4.86e-08 | 8.95e-07 | 106 |
GO:007189715 | Oral cavity | LP | DNA biosynthetic process | 71/4623 | 180/18723 | 8.04e-06 | 1.52e-04 | 71 |
GO:007189718 | Skin | cSCC | DNA biosynthetic process | 74/4864 | 180/18723 | 6.33e-06 | 8.92e-05 | 74 |
GO:0071897110 | Thyroid | PTC | DNA biosynthetic process | 82/5968 | 180/18723 | 7.98e-05 | 6.81e-04 | 82 |
GO:007189723 | Thyroid | ATC | DNA biosynthetic process | 91/6293 | 180/18723 | 1.84e-06 | 2.24e-05 | 91 |
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Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
hsa034205 | Esophagus | HGIN | Nucleotide excision repair | 29/1383 | 63/8465 | 2.96e-08 | 5.36e-07 | 4.26e-07 | 29 |
hsa0342012 | Esophagus | HGIN | Nucleotide excision repair | 29/1383 | 63/8465 | 2.96e-08 | 5.36e-07 | 4.26e-07 | 29 |
hsa0342022 | Esophagus | ESCC | Nucleotide excision repair | 54/4205 | 63/8465 | 2.01e-09 | 2.17e-08 | 1.11e-08 | 54 |
hsa034104 | Esophagus | ESCC | Base excision repair | 38/4205 | 44/8465 | 3.59e-07 | 2.62e-06 | 1.34e-06 | 38 |
hsa030304 | Esophagus | ESCC | DNA replication | 32/4205 | 36/8465 | 7.71e-07 | 5.06e-06 | 2.59e-06 | 32 |
hsa0342032 | Esophagus | ESCC | Nucleotide excision repair | 54/4205 | 63/8465 | 2.01e-09 | 2.17e-08 | 1.11e-08 | 54 |
hsa0341011 | Esophagus | ESCC | Base excision repair | 38/4205 | 44/8465 | 3.59e-07 | 2.62e-06 | 1.34e-06 | 38 |
hsa0303011 | Esophagus | ESCC | DNA replication | 32/4205 | 36/8465 | 7.71e-07 | 5.06e-06 | 2.59e-06 | 32 |
hsa03420 | Liver | Cirrhotic | Nucleotide excision repair | 29/2530 | 63/8465 | 4.81e-03 | 1.74e-02 | 1.07e-02 | 29 |
hsa034201 | Liver | Cirrhotic | Nucleotide excision repair | 29/2530 | 63/8465 | 4.81e-03 | 1.74e-02 | 1.07e-02 | 29 |
hsa034202 | Liver | HCC | Nucleotide excision repair | 41/4020 | 63/8465 | 3.59e-03 | 1.12e-02 | 6.22e-03 | 41 |
hsa034203 | Liver | HCC | Nucleotide excision repair | 41/4020 | 63/8465 | 3.59e-03 | 1.12e-02 | 6.22e-03 | 41 |
hsa034204 | Oral cavity | OSCC | Nucleotide excision repair | 49/3704 | 63/8465 | 3.48e-08 | 2.91e-07 | 1.48e-07 | 49 |
hsa03030 | Oral cavity | OSCC | DNA replication | 31/3704 | 36/8465 | 1.70e-07 | 1.19e-06 | 6.03e-07 | 31 |
hsa03410 | Oral cavity | OSCC | Base excision repair | 32/3704 | 44/8465 | 9.11e-05 | 3.25e-04 | 1.65e-04 | 32 |
hsa0342011 | Oral cavity | OSCC | Nucleotide excision repair | 49/3704 | 63/8465 | 3.48e-08 | 2.91e-07 | 1.48e-07 | 49 |
hsa030301 | Oral cavity | OSCC | DNA replication | 31/3704 | 36/8465 | 1.70e-07 | 1.19e-06 | 6.03e-07 | 31 |
hsa034101 | Oral cavity | OSCC | Base excision repair | 32/3704 | 44/8465 | 9.11e-05 | 3.25e-04 | 1.65e-04 | 32 |
hsa0342021 | Oral cavity | LP | Nucleotide excision repair | 37/2418 | 63/8465 | 5.14e-07 | 6.33e-06 | 4.08e-06 | 37 |
hsa030302 | Oral cavity | LP | DNA replication | 23/2418 | 36/8465 | 1.08e-05 | 7.79e-05 | 5.02e-05 | 23 |
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Cell-cell communication analysis |
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Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
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Single-cell gene regulatory network inference analysis |
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∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
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Somatic mutation of malignant transformation related genes |
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Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
POLE4 | SNV | Missense_Mutation | novel | c.202G>A | p.Ala68Thr | p.A68T | Q9NR33 | protein_coding | tolerated(0.29) | benign(0.078) | TCGA-AX-A2HA-01 | Endometrium | uterine corpus endometrioid carcinoma | Female | <65 | I/II | Unknown | Unknown | SD |
POLE4 | SNV | Missense_Mutation | novel | c.272N>T | p.Arg91Met | p.R91M | Q9NR33 | protein_coding | deleterious(0) | probably_damaging(1) | TCGA-B5-A3FA-01 | Endometrium | uterine corpus endometrioid carcinoma | Female | >=65 | I/II | Unknown | Unknown | SD |
POLE4 | SNV | Missense_Mutation | rs199691810 | c.307N>G | p.Ile103Val | p.I103V | Q9NR33 | protein_coding | tolerated(0.1) | benign(0.325) | TCGA-34-5234-01 | Lung | lung squamous cell carcinoma | Female | >=65 | I/II | Unknown | Unknown | SD |
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Related drugs of malignant transformation related genes |
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(DGIdb 4.0) |
Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
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