|
|||||
|
 | |
| |
| |
| |
| |
| |
|
Gene: MESP1 |
Gene summary for MESP1 |
 Gene summary. |
| Gene information | Species | Human | Gene symbol | MESP1 | Gene ID | 55897 |
| Gene name | mesoderm posterior bHLH transcription factor 1 | |
| Gene Alias | bHLHc5 | |
| Cytomap | 15q26.1 | |
| Gene Type | protein-coding | GO ID | GO:0000578 | UniProtAcc | Q9BRJ9 |
Top |
Malignant transformation analysis |
| Identification of the aberrant gene expression in precancerous and cancerous lesions by comparing the gene expression of stem-like cells in diseased tissues with normal stem cells |
| Malignant transformation involving gene list. |
| Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
| 55897 | MESP1 | GSM4909294 | Human | Breast | IDC | 1.76e-04 | 3.66e-01 | 0.2022 |
| 55897 | MESP1 | GSM4909295 | Human | Breast | IDC | 9.10e-04 | 3.48e-01 | 0.0898 |
| 55897 | MESP1 | GSM4909301 | Human | Breast | IDC | 1.16e-14 | 6.02e-01 | 0.1577 |
| 55897 | MESP1 | GSM4909304 | Human | Breast | IDC | 1.16e-02 | -1.28e-01 | 0.1636 |
| 55897 | MESP1 | GSM4909305 | Human | Breast | IDC | 8.53e-03 | 2.56e-01 | 0.0436 |
| 55897 | MESP1 | GSM4909306 | Human | Breast | IDC | 5.94e-29 | 7.97e-01 | 0.1564 |
| 55897 | MESP1 | GSM4909308 | Human | Breast | IDC | 3.00e-04 | -1.71e-01 | 0.158 |
| 55897 | MESP1 | GSM4909309 | Human | Breast | IDC | 1.24e-02 | 2.39e-01 | 0.0483 |
| 55897 | MESP1 | GSM4909311 | Human | Breast | IDC | 1.78e-05 | -1.61e-01 | 0.1534 |
| 55897 | MESP1 | GSM4909312 | Human | Breast | IDC | 7.25e-03 | -1.38e-01 | 0.1552 |
| 55897 | MESP1 | GSM4909315 | Human | Breast | IDC | 6.28e-05 | -1.60e-01 | 0.21 |
| 55897 | MESP1 | GSM4909319 | Human | Breast | IDC | 6.53e-07 | -1.28e-01 | 0.1563 |
| 55897 | MESP1 | GSM4909320 | Human | Breast | IDC | 1.82e-03 | 1.60e-01 | 0.1575 |
| 55897 | MESP1 | GSM4909321 | Human | Breast | IDC | 1.61e-11 | 4.40e-01 | 0.1559 |
| 55897 | MESP1 | M2 | Human | Breast | IDC | 9.20e-03 | 2.69e-01 | 0.21 |
| 55897 | MESP1 | NCCBC14 | Human | Breast | DCIS | 3.33e-02 | -1.08e-01 | 0.2021 |
| 55897 | MESP1 | NCCBC6 | Human | Breast | DCIS | 1.42e-03 | 3.43e-01 | 0.2095 |
| 55897 | MESP1 | DCIS2 | Human | Breast | DCIS | 1.35e-35 | 2.17e-01 | 0.0085 |
| 55897 | MESP1 | LZE5T | Human | Esophagus | ESCC | 1.60e-07 | 7.54e-01 | 0.0514 |
| 55897 | MESP1 | P2T-E | Human | Esophagus | ESCC | 6.35e-16 | 2.56e-01 | 0.1177 |
| Page: 1 2 3 |
| Transcriptomic changes along malignancy continuum. |
| Tissue | Expression Dynamics | Abbreviation |
| Breast |  | IDC: Invasive ductal carcinoma |
| DCIS: Ductal carcinoma in situ | ||
| Precancer(BRCA1-mut): Precancerous lesion from BRCA1 mutation carriers | ||
| Esophagus |  | ESCC: Esophageal squamous cell carcinoma |
| HGIN: High-grade intraepithelial neoplasias | ||
| LGIN: Low-grade intraepithelial neoplasias | ||
| Liver |  | HCC: Hepatocellular carcinoma |
| NAFLD: Non-alcoholic fatty liver disease | ||
| Prostate |  | BPH: Benign Prostatic Hyperplasia |
| ∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
Top |
Malignant transformation related pathway analysis |
| Find out the enriched GO biological processes and KEGG pathways involved in transition from healthy to precancer to cancer |
| Figure of enriched GO biological processes. |
| Tissue | Disease Stage | Enriched GO biological Processes |
| Colorectum | AD |  |
| Colorectum | SER |  |
| Colorectum | MSS |  |
| Colorectum | MSI-H |  |
| Colorectum | FAP |  |
| ∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
| Page: 1 2 3 4 5 6 7 8 9 |
| Enriched GO biological processes. |
| GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
| GO:004873214 | Breast | IDC | gland development | 64/1434 | 436/18723 | 3.47e-07 | 1.74e-05 | 64 |
| GO:000166714 | Breast | IDC | ameboidal-type cell migration | 64/1434 | 475/18723 | 6.65e-06 | 2.05e-04 | 64 |
| GO:006056212 | Breast | IDC | epithelial tube morphogenesis | 44/1434 | 325/18723 | 1.58e-04 | 2.73e-03 | 44 |
| GO:000188913 | Breast | IDC | liver development | 24/1434 | 147/18723 | 3.29e-04 | 4.92e-03 | 24 |
| GO:006100813 | Breast | IDC | hepaticobiliary system development | 24/1434 | 150/18723 | 4.46e-04 | 6.04e-03 | 24 |
| GO:006053711 | Breast | IDC | muscle tissue development | 50/1434 | 403/18723 | 4.91e-04 | 6.45e-03 | 50 |
| GO:00147061 | Breast | IDC | striated muscle tissue development | 46/1434 | 384/18723 | 1.67e-03 | 1.63e-02 | 46 |
| GO:00426923 | Breast | IDC | muscle cell differentiation | 44/1434 | 384/18723 | 4.77e-03 | 3.66e-02 | 44 |
| GO:00511463 | Breast | IDC | striated muscle cell differentiation | 34/1434 | 283/18723 | 6.00e-03 | 4.31e-02 | 34 |
| GO:004873223 | Breast | DCIS | gland development | 60/1390 | 436/18723 | 2.50e-06 | 8.74e-05 | 60 |
| GO:000166723 | Breast | DCIS | ameboidal-type cell migration | 62/1390 | 475/18723 | 9.60e-06 | 2.56e-04 | 62 |
| GO:006053721 | Breast | DCIS | muscle tissue development | 50/1390 | 403/18723 | 2.39e-04 | 3.74e-03 | 50 |
| GO:000188923 | Breast | DCIS | liver development | 23/1390 | 147/18723 | 5.21e-04 | 6.76e-03 | 23 |
| GO:006056221 | Breast | DCIS | epithelial tube morphogenesis | 41/1390 | 325/18723 | 5.98e-04 | 7.60e-03 | 41 |
| GO:006100823 | Breast | DCIS | hepaticobiliary system development | 23/1390 | 150/18723 | 6.96e-04 | 8.47e-03 | 23 |
| GO:00147062 | Breast | DCIS | striated muscle tissue development | 46/1390 | 384/18723 | 8.88e-04 | 1.01e-02 | 46 |
| GO:004269211 | Breast | DCIS | muscle cell differentiation | 43/1390 | 384/18723 | 4.56e-03 | 3.49e-02 | 43 |
| GO:00031588 | Breast | DCIS | endothelium development | 19/1390 | 136/18723 | 5.61e-03 | 4.07e-02 | 19 |
| GO:005114611 | Breast | DCIS | striated muscle cell differentiation | 33/1390 | 283/18723 | 6.63e-03 | 4.62e-02 | 33 |
| GO:0048732111 | Esophagus | ESCC | gland development | 269/8552 | 436/18723 | 7.81e-12 | 2.95e-10 | 269 |
| Page: 1 2 3 4 5 6 |
| Enriched KEGG pathways. |
| Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
| Page: 1 |
Top |
Cell-cell communication analysis |
| Identification of potential cell-cell interactions between two cell types and their ligand-receptor pairs for different disease states |
| Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
| Page: 1 |
Top |
Single-cell gene regulatory network inference analysis |
| Find out the significant the regulons (TFs) and the target genes of each regulon across cell types for different disease states |
| TF | Cell Type | Tissue | Disease Stage | Target Gene | RSS | Regulon Activity |
| MESP1 | NK | Breast | ADJ | GGCT,SVBP,RHOU, etc. | 4.43e-02 |  |
| MESP1 | NK | Breast | DCIS | GGCT,SVBP,RHOU, etc. | 1.21e-01 |  |
| MESP1 | PLA | Breast | DCIS | GGCT,SVBP,RHOU, etc. | 1.51e-01 | |
| MESP1 | BMEM | Breast | DCIS | GGCT,SVBP,RHOU, etc. | 1.29e-01 | |
| MESP1 | NK | Breast | Healthy | GGCT,SVBP,RHOU, etc. | 1.31e-01 |  |
| MESP1 | NK | Breast | IDC | GGCT,SVBP,RHOU, etc. | 1.04e-01 |  |
| MESP1 | BMEM | Breast | IDC | GGCT,SVBP,RHOU, etc. | 9.23e-02 | |
| MESP1 | COL | Cervix | Healthy | VSIG2,BPIFB1,HOXB2, etc. | 3.24e-01 |  |
| MESP1 | AT1 | Lung | IAC | GGTLC1,ANPEP,B3GNT7, etc. | 8.55e-02 |  |
| MESP1 | LUM | Prostate | Healthy | ZNF217,PART1,CPE, etc. | 2.84e-01 |  |
| ∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
| Page: 1 |
Top |
Somatic mutation of malignant transformation related genes |
| Annotation of somatic variants for genes involved in malignant transformation |
| Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
| MESP1 | insertion | Nonsense_Mutation | novel | c.727_728insATTATTGAGTATTTATTGT | p.Leu243HisfsTer3 | p.L243Hfs*3 | Q9BRJ9 | protein_coding | TCGA-BH-A0DP-01 | Breast | breast invasive carcinoma | Female | <65 | I/II | Hormone Therapy | arimidex | SD | ||
| MESP1 | SNV | Missense_Mutation | c.391C>T | p.Arg131Cys | p.R131C | Q9BRJ9 | protein_coding | deleterious(0) | probably_damaging(0.995) | TCGA-44-8117-01 | Lung | lung adenocarcinoma | Female | <65 | I/II | Chemotherapy | cisplatin | CR | |
| MESP1 | SNV | Missense_Mutation | novel | c.461N>T | p.Arg154Leu | p.R154L | Q9BRJ9 | protein_coding | tolerated(0.34) | benign(0) | TCGA-58-8391-01 | Lung | lung squamous cell carcinoma | Female | <65 | III/IV | Chemotherapy | carboplatin | PD |
| MESP1 | SNV | Missense_Mutation | novel | c.74N>T | p.Pro25Leu | p.P25L | Q9BRJ9 | protein_coding | tolerated_low_confidence(0.19) | benign(0.003) | TCGA-58-8391-01 | Lung | lung squamous cell carcinoma | Female | <65 | III/IV | Chemotherapy | carboplatin | PD |
| MESP1 | SNV | Missense_Mutation | novel | c.754N>A | p.Glu252Lys | p.E252K | Q9BRJ9 | protein_coding | deleterious_low_confidence(0) | possibly_damaging(0.826) | TCGA-ET-A25R-01 | Thyroid | thyroid carcinoma | Female | <65 | III/IV | Unknown | Unknown | SD |
| Page: 1 |
Top |
Related drugs of malignant transformation related genes |
| Identification of chemicals and drugs interact with genes involved in malignant transfromation |
| (DGIdb 4.0) |
| Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
| Page: 1 |
Copyright 2023-Present -The University of Texas Health Science Center at Houston |