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Gene: LINC02568 |
Gene summary for LINC02568 |
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Gene information | Species | Human | Gene symbol | LINC02568 | Gene ID | 102723344 |
Gene name | long intergenic non-protein coding RNA 2568 | |
Gene Alias | LINC02568 | |
Cytomap | 15q22.2-q22.31 | |
Gene Type | ncRNA | GO ID | NA | UniProtAcc | NA |
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Malignant transformation analysis |
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Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
102723344 | LINC02568 | HTA11_347_2000001011 | Human | Colorectum | AD | 5.51e-12 | 7.07e-01 | -0.1954 |
102723344 | LINC02568 | HTA11_99999970781_79442 | Human | Colorectum | MSS | 8.94e-11 | -2.90e-01 | 0.294 |
102723344 | LINC02568 | HTA11_99999965104_69814 | Human | Colorectum | MSS | 3.14e-02 | -2.90e-01 | 0.281 |
102723344 | LINC02568 | HTA11_99999971662_82457 | Human | Colorectum | MSS | 1.96e-10 | -2.90e-01 | 0.3859 |
102723344 | LINC02568 | HTA11_99999974143_84620 | Human | Colorectum | MSS | 4.08e-11 | -2.90e-01 | 0.3005 |
102723344 | LINC02568 | A015-C-203 | Human | Colorectum | FAP | 9.21e-03 | -1.25e-01 | -0.1294 |
102723344 | LINC02568 | A002-C-205 | Human | Colorectum | FAP | 1.12e-02 | -1.94e-01 | -0.1236 |
102723344 | LINC02568 | A015-C-104 | Human | Colorectum | FAP | 3.08e-04 | -1.19e-01 | -0.1899 |
102723344 | LINC02568 | A002-C-016 | Human | Colorectum | FAP | 2.17e-05 | -1.93e-01 | 0.0521 |
102723344 | LINC02568 | A002-C-116 | Human | Colorectum | FAP | 4.81e-04 | -1.22e-01 | -0.0452 |
102723344 | LINC02568 | F072B | Human | Colorectum | FAP | 1.17e-03 | -2.45e-01 | 0.257 |
102723344 | LINC02568 | CRC-1-8810 | Human | Colorectum | CRC | 1.42e-07 | -2.84e-01 | 0.6257 |
102723344 | LINC02568 | CRC-3-11773 | Human | Colorectum | CRC | 7.29e-07 | -2.60e-01 | 0.2564 |
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∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
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Malignant transformation related pathway analysis |
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Tissue | Disease Stage | Enriched GO biological Processes |
Colorectum | AD | ![]() |
Colorectum | SER | ![]() |
Colorectum | MSS | ![]() |
Colorectum | MSI-H | ![]() |
Colorectum | FAP | ![]() |
∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
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GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
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Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
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Cell-cell communication analysis |
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Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
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Single-cell gene regulatory network inference analysis |
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TF | Cell Type | Tissue | Disease Stage | Target Gene | RSS | Regulon Activity |
∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
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Somatic mutation of malignant transformation related genes |
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Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
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Related drugs of malignant transformation related genes |
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(DGIdb 4.0) |
Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
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