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Gene: LINC02471 |
Gene summary for LINC02471 |
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Gene information | Species | Human | Gene symbol | LINC02471 | Gene ID | 105369734 |
Gene name | long intergenic non-protein coding RNA 2471 | |
Gene Alias | LINC02471 | |
Cytomap | 12q12 | |
Gene Type | ncRNA | GO ID | NA | UniProtAcc | NA |
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Malignant transformation analysis |
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Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
105369734 | LINC02471 | RNA-P10T2-P10T2-1 | Human | Lung | AAH | 3.17e-04 | 7.20e-01 | -0.1271 |
105369734 | LINC02471 | RNA-P10T2-P10T2-2 | Human | Lung | AAH | 1.30e-05 | 7.22e-01 | -0.1406 |
105369734 | LINC02471 | RNA-P10T2-P10T2-3 | Human | Lung | AAH | 1.22e-06 | 7.78e-01 | -0.1408 |
105369734 | LINC02471 | RNA-P10T2-P10T2-4 | Human | Lung | AAH | 5.54e-03 | 6.24e-01 | -0.138 |
105369734 | LINC02471 | RNA-P25T1-P25T1-1 | Human | Lung | AIS | 1.60e-12 | 5.63e-01 | -0.2116 |
105369734 | LINC02471 | RNA-P25T1-P25T1-2 | Human | Lung | AIS | 2.37e-02 | 3.76e-01 | -0.1941 |
105369734 | LINC02471 | RNA-P25T1-P25T1-3 | Human | Lung | AIS | 4.20e-06 | 5.16e-01 | -0.2107 |
105369734 | LINC02471 | RNA-P25T1-P25T1-4 | Human | Lung | AIS | 2.01e-09 | 5.22e-01 | -0.2119 |
105369734 | LINC02471 | RNA-P6T2-P6T2-1 | Human | Lung | IAC | 5.75e-30 | 8.51e-01 | -0.0166 |
105369734 | LINC02471 | RNA-P6T2-P6T2-2 | Human | Lung | IAC | 4.78e-35 | 8.86e-01 | -0.0132 |
105369734 | LINC02471 | RNA-P6T2-P6T2-3 | Human | Lung | IAC | 9.40e-35 | 8.54e-01 | -0.013 |
105369734 | LINC02471 | RNA-P6T2-P6T2-4 | Human | Lung | IAC | 3.52e-29 | 8.11e-01 | -0.0121 |
105369734 | LINC02471 | male-WTA | Human | Thyroid | PTC | 2.29e-02 | 8.15e-02 | 0.1037 |
105369734 | LINC02471 | PTC01 | Human | Thyroid | PTC | 2.53e-27 | 4.93e-01 | 0.1899 |
105369734 | LINC02471 | PTC04 | Human | Thyroid | PTC | 2.60e-44 | 8.79e-01 | 0.1927 |
105369734 | LINC02471 | PTC05 | Human | Thyroid | PTC | 1.67e-18 | 6.17e-01 | 0.2065 |
105369734 | LINC02471 | PTC06 | Human | Thyroid | PTC | 6.23e-55 | 1.23e+00 | 0.2057 |
105369734 | LINC02471 | PTC07 | Human | Thyroid | PTC | 8.25e-73 | 1.14e+00 | 0.2044 |
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∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
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Malignant transformation related pathway analysis |
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Tissue | Disease Stage | Enriched GO biological Processes |
Colorectum | AD | ![]() |
Colorectum | SER | ![]() |
Colorectum | MSS | ![]() |
Colorectum | MSI-H | ![]() |
Colorectum | FAP | ![]() |
∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
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GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
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Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
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Cell-cell communication analysis |
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Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
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Single-cell gene regulatory network inference analysis |
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TF | Cell Type | Tissue | Disease Stage | Target Gene | RSS | Regulon Activity |
∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
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Somatic mutation of malignant transformation related genes |
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Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
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Related drugs of malignant transformation related genes |
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(DGIdb 4.0) |
Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
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