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Gene: LINC02256 |
Gene summary for LINC02256 |
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Gene information | Species | Human | Gene symbol | LINC02256 | Gene ID | 100996255 |
Gene name | long intergenic non-protein coding RNA 2256 | |
Gene Alias | LINC02256 | |
Cytomap | 15q13.3 | |
Gene Type | ncRNA | GO ID | NA | UniProtAcc | NA |
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Malignant transformation analysis |
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Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
100996255 | LINC02256 | HTA12-23-1 | Human | Pancreas | PDAC | 1.55e-12 | 9.81e-01 | 0.3405 |
100996255 | LINC02256 | HTA12-25-1 | Human | Pancreas | PDAC | 2.07e-12 | 8.63e-01 | 0.313 |
100996255 | LINC02256 | HTA12-26-1 | Human | Pancreas | PDAC | 3.49e-18 | 8.01e-01 | 0.3728 |
100996255 | LINC02256 | HTA12-29-1 | Human | Pancreas | PDAC | 3.17e-51 | 1.03e+00 | 0.3722 |
100996255 | LINC02256 | HTA12-30-1 | Human | Pancreas | PDAC | 4.00e-02 | 1.00e+00 | 0.3671 |
100996255 | LINC02256 | PTC01 | Human | Thyroid | PTC | 5.67e-05 | 1.59e-01 | 0.1899 |
100996255 | LINC02256 | PTC03 | Human | Thyroid | PTC | 1.35e-04 | 2.57e-01 | 0.1784 |
100996255 | LINC02256 | PTC04 | Human | Thyroid | PTC | 5.71e-10 | 2.43e-01 | 0.1927 |
100996255 | LINC02256 | PTC05 | Human | Thyroid | PTC | 1.91e-04 | 1.95e-01 | 0.2065 |
100996255 | LINC02256 | PTC06 | Human | Thyroid | PTC | 3.81e-12 | 2.91e-01 | 0.2057 |
100996255 | LINC02256 | PTC07 | Human | Thyroid | PTC | 4.70e-13 | 2.63e-01 | 0.2044 |
100996255 | LINC02256 | ATC12 | Human | Thyroid | ATC | 8.28e-20 | 3.92e-01 | 0.34 |
100996255 | LINC02256 | ATC13 | Human | Thyroid | ATC | 5.37e-18 | 3.71e-01 | 0.34 |
100996255 | LINC02256 | ATC2 | Human | Thyroid | ATC | 5.35e-04 | 5.05e-01 | 0.34 |
100996255 | LINC02256 | ATC4 | Human | Thyroid | ATC | 5.41e-21 | 4.42e-01 | 0.34 |
100996255 | LINC02256 | ATC5 | Human | Thyroid | ATC | 2.11e-25 | 3.83e-01 | 0.34 |
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Tissue | Expression Dynamics | Abbreviation |
Thyroid | ![]() | ATC: Anaplastic thyroid cancer |
HT: Hashimoto's thyroiditis | ||
PTC: Papillary thyroid cancer |
∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
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Malignant transformation related pathway analysis |
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Tissue | Disease Stage | Enriched GO biological Processes |
Colorectum | AD | ![]() |
Colorectum | SER | ![]() |
Colorectum | MSS | ![]() |
Colorectum | MSI-H | ![]() |
Colorectum | FAP | ![]() |
∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
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GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
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Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
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Cell-cell communication analysis |
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Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
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Single-cell gene regulatory network inference analysis |
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TF | Cell Type | Tissue | Disease Stage | Target Gene | RSS | Regulon Activity |
∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
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Somatic mutation of malignant transformation related genes |
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Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
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Related drugs of malignant transformation related genes |
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(DGIdb 4.0) |
Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
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