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Gene: LINC01876 |
Gene summary for LINC01876 |
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Gene information | Species | Human | Gene symbol | LINC01876 | Gene ID | 101929378 |
Gene name | long intergenic non-protein coding RNA 1876 | |
Gene Alias | LINC01876 | |
Cytomap | 2q24.1 | |
Gene Type | ncRNA | GO ID | NA | UniProtAcc | NA |
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Malignant transformation analysis |
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Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
101929378 | LINC01876 | CCI_1 | Human | Cervix | CC | 4.61e-27 | 1.49e+00 | 0.528 |
101929378 | LINC01876 | CCI_3 | Human | Cervix | CC | 8.75e-33 | 1.25e+00 | 0.516 |
101929378 | LINC01876 | CCII_1 | Human | Cervix | CC | 5.74e-19 | 4.49e-01 | 0.3249 |
101929378 | LINC01876 | HTA11_3410_2000001011 | Human | Colorectum | AD | 1.24e-43 | -1.02e+00 | 0.0155 |
101929378 | LINC01876 | HTA11_2487_2000001011 | Human | Colorectum | SER | 2.59e-16 | -9.06e-01 | -0.1808 |
101929378 | LINC01876 | HTA11_2951_2000001011 | Human | Colorectum | AD | 1.03e-11 | -1.38e+00 | 0.0216 |
101929378 | LINC01876 | HTA11_1938_2000001011 | Human | Colorectum | AD | 9.17e-10 | -7.08e-01 | -0.0811 |
101929378 | LINC01876 | HTA11_78_2000001011 | Human | Colorectum | AD | 1.35e-13 | -8.43e-01 | -0.1088 |
101929378 | LINC01876 | HTA11_347_2000001011 | Human | Colorectum | AD | 1.02e-03 | -2.76e-01 | -0.1954 |
101929378 | LINC01876 | HTA11_3361_2000001011 | Human | Colorectum | AD | 4.41e-23 | -1.13e+00 | -0.1207 |
101929378 | LINC01876 | HTA11_696_2000001011 | Human | Colorectum | AD | 5.71e-57 | -1.28e+00 | -0.1464 |
101929378 | LINC01876 | HTA11_866_2000001011 | Human | Colorectum | AD | 1.45e-36 | -1.06e+00 | -0.1001 |
101929378 | LINC01876 | HTA11_1391_2000001011 | Human | Colorectum | AD | 3.78e-35 | -1.20e+00 | -0.059 |
101929378 | LINC01876 | HTA11_5212_2000001011 | Human | Colorectum | AD | 1.90e-10 | -1.21e+00 | -0.2061 |
101929378 | LINC01876 | HTA11_5216_2000001011 | Human | Colorectum | SER | 2.46e-04 | -9.42e-01 | -0.1462 |
101929378 | LINC01876 | HTA11_546_2000001011 | Human | Colorectum | AD | 2.88e-17 | -1.26e+00 | -0.0842 |
101929378 | LINC01876 | HTA11_9341_2000001011 | Human | Colorectum | SER | 1.60e-03 | -1.01e+00 | -0.00410000000000005 |
101929378 | LINC01876 | HTA11_7862_2000001011 | Human | Colorectum | AD | 3.31e-02 | -7.02e-01 | -0.0179 |
101929378 | LINC01876 | HTA11_866_3004761011 | Human | Colorectum | AD | 5.35e-52 | -1.37e+00 | 0.096 |
101929378 | LINC01876 | HTA11_4255_2000001011 | Human | Colorectum | SER | 3.91e-06 | -8.44e-01 | 0.0446 |
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∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
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Malignant transformation related pathway analysis |
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Tissue | Disease Stage | Enriched GO biological Processes |
Colorectum | AD | ![]() |
Colorectum | SER | ![]() |
Colorectum | MSS | ![]() |
Colorectum | MSI-H | ![]() |
Colorectum | FAP | ![]() |
∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
Page: 1 2 3 4 5 6 7 8 9 |
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GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
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Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
Page: 1 |
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Cell-cell communication analysis |
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Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
Page: 1 |
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Single-cell gene regulatory network inference analysis |
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TF | Cell Type | Tissue | Disease Stage | Target Gene | RSS | Regulon Activity |
∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
Page: 1 |
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Somatic mutation of malignant transformation related genes |
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Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
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Related drugs of malignant transformation related genes |
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(DGIdb 4.0) |
Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
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