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Gene: LINC01811 |
Gene summary for LINC01811 |
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Gene information | Species | Human | Gene symbol | LINC01811 | Gene ID | 101928114 |
Gene name | long intergenic non-protein coding RNA 1811 | |
Gene Alias | LINC01811 | |
Cytomap | 3p22.3 | |
Gene Type | ncRNA | GO ID | NA | UniProtAcc | NA |
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Malignant transformation analysis |
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Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
101928114 | LINC01811 | HTA11_3410_2000001011 | Human | Colorectum | AD | 4.09e-05 | 1.34e-01 | 0.0155 |
101928114 | LINC01811 | HTA11_10711_2000001011 | Human | Colorectum | AD | 6.46e-03 | 3.02e-01 | 0.0338 |
101928114 | LINC01811 | HTA11_7696_3000711011 | Human | Colorectum | AD | 4.11e-21 | 5.96e-01 | 0.0674 |
101928114 | LINC01811 | HTA11_6818_2000001021 | Human | Colorectum | AD | 1.29e-12 | 6.74e-01 | 0.0588 |
101928114 | LINC01811 | F007 | Human | Colorectum | FAP | 1.33e-12 | 7.19e-01 | 0.1176 |
101928114 | LINC01811 | A002-C-010 | Human | Colorectum | FAP | 1.29e-04 | 3.42e-01 | 0.242 |
101928114 | LINC01811 | A001-C-207 | Human | Colorectum | FAP | 3.20e-03 | 3.60e-01 | 0.1278 |
101928114 | LINC01811 | A002-C-203 | Human | Colorectum | FAP | 3.69e-05 | 4.20e-01 | 0.2786 |
101928114 | LINC01811 | A002-C-021 | Human | Colorectum | FAP | 1.28e-13 | 5.15e-01 | 0.1171 |
101928114 | LINC01811 | A001-C-007 | Human | Colorectum | CRC | 2.48e-25 | 1.14e+00 | 0.1899 |
101928114 | LINC01811 | F034 | Human | Colorectum | FAP | 5.16e-17 | 8.01e-01 | -0.0665 |
101928114 | LINC01811 | F072B | Human | Colorectum | FAP | 2.59e-24 | 8.44e-01 | 0.257 |
101928114 | LINC01811 | CRC-1-8810 | Human | Colorectum | CRC | 9.60e-107 | 1.67e+00 | 0.6257 |
101928114 | LINC01811 | CRC-3-11773 | Human | Colorectum | CRC | 1.10e-17 | 7.01e-01 | 0.2564 |
101928114 | LINC01811 | RNA-P25T1-P25T1-1 | Human | Lung | AIS | 8.41e-18 | 9.29e-01 | -0.2116 |
101928114 | LINC01811 | RNA-P25T1-P25T1-2 | Human | Lung | AIS | 1.98e-07 | 7.32e-01 | -0.1941 |
101928114 | LINC01811 | RNA-P25T1-P25T1-3 | Human | Lung | AIS | 2.15e-08 | 8.02e-01 | -0.2107 |
101928114 | LINC01811 | RNA-P25T1-P25T1-4 | Human | Lung | AIS | 1.11e-12 | 8.19e-01 | -0.2119 |
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∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
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Malignant transformation related pathway analysis |
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Tissue | Disease Stage | Enriched GO biological Processes |
Colorectum | AD | ![]() |
Colorectum | SER | ![]() |
Colorectum | MSS | ![]() |
Colorectum | MSI-H | ![]() |
Colorectum | FAP | ![]() |
∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
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GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
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Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
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Cell-cell communication analysis |
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Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
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Single-cell gene regulatory network inference analysis |
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TF | Cell Type | Tissue | Disease Stage | Target Gene | RSS | Regulon Activity |
∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
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Somatic mutation of malignant transformation related genes |
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Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
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Related drugs of malignant transformation related genes |
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(DGIdb 4.0) |
Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
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