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Gene: LINC01748 |
Gene summary for LINC01748 |
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Gene information | Species | Human | Gene symbol | LINC01748 | Gene ID | 105378763 |
Gene name | long intergenic non-protein coding RNA 1748 | |
Gene Alias | LINC01748 | |
Cytomap | 1p32.1 | |
Gene Type | ncRNA | GO ID | NA | UniProtAcc | NA |
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Malignant transformation analysis |
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Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
105378763 | LINC01748 | CCI_1 | Human | Cervix | CC | 7.78e-10 | 5.43e-01 | 0.528 |
105378763 | LINC01748 | CCI_3 | Human | Cervix | CC | 3.48e-16 | 7.78e-01 | 0.516 |
105378763 | LINC01748 | HTA11_3410_2000001011 | Human | Colorectum | AD | 3.70e-07 | 1.56e-01 | 0.0155 |
105378763 | LINC01748 | HTA11_7696_3000711011 | Human | Colorectum | AD | 2.99e-29 | 7.85e-01 | 0.0674 |
105378763 | LINC01748 | HTA11_99999970781_79442 | Human | Colorectum | MSS | 1.92e-04 | -2.17e-01 | 0.294 |
105378763 | LINC01748 | HTA11_99999971662_82457 | Human | Colorectum | MSS | 1.92e-04 | -2.17e-01 | 0.3859 |
105378763 | LINC01748 | HTA11_99999974143_84620 | Human | Colorectum | MSS | 1.92e-04 | -2.17e-01 | 0.3005 |
105378763 | LINC01748 | A001-C-207 | Human | Colorectum | FAP | 2.32e-02 | 4.89e-01 | 0.1278 |
105378763 | LINC01748 | A002-C-201 | Human | Colorectum | FAP | 4.51e-10 | 6.70e-01 | 0.0324 |
105378763 | LINC01748 | A002-C-021 | Human | Colorectum | FAP | 8.11e-03 | 2.68e-01 | 0.1171 |
105378763 | LINC01748 | A001-C-104 | Human | Colorectum | FAP | 1.68e-19 | 7.79e-01 | 0.0184 |
105378763 | LINC01748 | A002-C-116 | Human | Colorectum | FAP | 3.20e-04 | 3.29e-01 | -0.0452 |
105378763 | LINC01748 | A008-E-015 | Human | Colorectum | FAP | 8.11e-49 | 9.86e-01 | 0.0177 |
105378763 | LINC01748 | CRC-1-8810 | Human | Colorectum | CRC | 2.90e-39 | 1.11e+00 | 0.6257 |
105378763 | LINC01748 | CRC-3-11773 | Human | Colorectum | CRC | 3.87e-14 | 5.94e-01 | 0.2564 |
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∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
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Malignant transformation related pathway analysis |
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Tissue | Disease Stage | Enriched GO biological Processes |
Colorectum | AD | ![]() |
Colorectum | SER | ![]() |
Colorectum | MSS | ![]() |
Colorectum | MSI-H | ![]() |
Colorectum | FAP | ![]() |
∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
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GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
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Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
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Cell-cell communication analysis |
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Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
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Single-cell gene regulatory network inference analysis |
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TF | Cell Type | Tissue | Disease Stage | Target Gene | RSS | Regulon Activity |
∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
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Somatic mutation of malignant transformation related genes |
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Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
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Related drugs of malignant transformation related genes |
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(DGIdb 4.0) |
Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
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