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Gene: LINC01503 |
Gene summary for LINC01503 |
 Gene summary. |
| Gene information | Species | Human | Gene symbol | LINC01503 | Gene ID | 100506119 |
| Gene name | long intergenic non-protein coding RNA 1503 | |
| Gene Alias | LINC01503 | |
| Cytomap | 9q34.11 | |
| Gene Type | ncRNA | GO ID | NA | UniProtAcc | NA |
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Malignant transformation analysis |
| Identification of the aberrant gene expression in precancerous and cancerous lesions by comparing the gene expression of stem-like cells in diseased tissues with normal stem cells |
| Malignant transformation involving gene list. |
| Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
| 100506119 | LINC01503 | CCI_1 | Human | Cervix | CC | 3.21e-13 | 4.85e-01 | 0.528 |
| 100506119 | LINC01503 | CCI_2 | Human | Cervix | CC | 5.24e-13 | 7.19e-01 | 0.5249 |
| 100506119 | LINC01503 | CCI_3 | Human | Cervix | CC | 5.92e-17 | 6.01e-01 | 0.516 |
| 100506119 | LINC01503 | CCII_1 | Human | Cervix | CC | 1.71e-05 | 1.93e-01 | 0.3249 |
| 100506119 | LINC01503 | Tumor | Human | Cervix | CC | 2.66e-15 | 3.24e-01 | 0.1241 |
| 100506119 | LINC01503 | sample3 | Human | Cervix | CC | 3.25e-30 | 4.04e-01 | 0.1387 |
| 100506119 | LINC01503 | H2 | Human | Cervix | HSIL_HPV | 8.11e-04 | 1.19e-01 | 0.0632 |
| 100506119 | LINC01503 | T1 | Human | Cervix | CC | 2.25e-06 | 1.52e-01 | 0.0918 |
| 100506119 | LINC01503 | T3 | Human | Cervix | CC | 4.88e-24 | 3.72e-01 | 0.1389 |
| 100506119 | LINC01503 | LZE4T | Human | Esophagus | ESCC | 2.76e-06 | 1.59e-01 | 0.0811 |
| 100506119 | LINC01503 | LZE8T | Human | Esophagus | ESCC | 1.62e-09 | 2.21e-01 | 0.067 |
| 100506119 | LINC01503 | LZE20T | Human | Esophagus | ESCC | 1.47e-11 | 4.12e-01 | 0.0662 |
| 100506119 | LINC01503 | LZE6T | Human | Esophagus | ESCC | 6.07e-09 | 3.76e-01 | 0.0845 |
| 100506119 | LINC01503 | P1T-E | Human | Esophagus | ESCC | 2.27e-03 | 2.25e-01 | 0.0875 |
| 100506119 | LINC01503 | P2T-E | Human | Esophagus | ESCC | 1.74e-18 | 3.33e-01 | 0.1177 |
| 100506119 | LINC01503 | P4T-E | Human | Esophagus | ESCC | 7.17e-10 | 2.39e-01 | 0.1323 |
| 100506119 | LINC01503 | P5T-E | Human | Esophagus | ESCC | 2.16e-15 | 1.28e-01 | 0.1327 |
| 100506119 | LINC01503 | P8T-E | Human | Esophagus | ESCC | 6.43e-18 | 3.74e-01 | 0.0889 |
| 100506119 | LINC01503 | P9T-E | Human | Esophagus | ESCC | 2.15e-19 | 3.90e-01 | 0.1131 |
| 100506119 | LINC01503 | P10T-E | Human | Esophagus | ESCC | 1.53e-08 | 2.10e-01 | 0.116 |
| Page: 1 2 3 4 |
| Transcriptomic changes along malignancy continuum. |
| Tissue | Expression Dynamics | Abbreviation |
| Cervix |  | CC: Cervix cancer |
| HSIL_HPV: HPV-infected high-grade squamous intraepithelial lesions | ||
| N_HPV: HPV-infected normal cervix | ||
| Esophagus |  | ESCC: Esophageal squamous cell carcinoma |
| HGIN: High-grade intraepithelial neoplasias | ||
| LGIN: Low-grade intraepithelial neoplasias | ||
| Oral Cavity |  | EOLP: Erosive Oral lichen planus |
| LP: leukoplakia | ||
| NEOLP: Non-erosive oral lichen planus | ||
| OSCC: Oral squamous cell carcinoma |
| ∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
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Malignant transformation related pathway analysis |
| Find out the enriched GO biological processes and KEGG pathways involved in transition from healthy to precancer to cancer |
| Figure of enriched GO biological processes. |
| Tissue | Disease Stage | Enriched GO biological Processes |
| Colorectum | AD |  |
| Colorectum | SER |  |
| Colorectum | MSS |  |
| Colorectum | MSI-H |  |
| Colorectum | FAP |  |
| ∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
| Page: 1 2 3 4 5 6 7 8 9 |
| Enriched GO biological processes. |
| GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
| Page: 1 |
| Enriched KEGG pathways. |
| Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
| Page: 1 |
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Cell-cell communication analysis |
| Identification of potential cell-cell interactions between two cell types and their ligand-receptor pairs for different disease states |
| Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
| Page: 1 |
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Single-cell gene regulatory network inference analysis |
| Find out the significant the regulons (TFs) and the target genes of each regulon across cell types for different disease states |
| TF | Cell Type | Tissue | Disease Stage | Target Gene | RSS | Regulon Activity |
| ∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
| Page: 1 |
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Somatic mutation of malignant transformation related genes |
| Annotation of somatic variants for genes involved in malignant transformation |
| Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
| Page: 1 |
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Related drugs of malignant transformation related genes |
| Identification of chemicals and drugs interact with genes involved in malignant transfromation |
| (DGIdb 4.0) |
| Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
| Page: 1 |
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