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Gene: LINC01426 |
Gene summary for LINC01426 |
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Gene information | Species | Human | Gene symbol | LINC01426 | Gene ID | 100506385 |
Gene name | long intergenic non-protein coding RNA 1426 | |
Gene Alias | lincRNA-uc002yug.2 | |
Cytomap | 21q22.12 | |
Gene Type | ncRNA | GO ID | NA | UniProtAcc | NA |
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Malignant transformation analysis |
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Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
100506385 | LINC01426 | HCC2_Meng | Human | Liver | HCC | 6.59e-09 | 7.46e-02 | 0.0107 |
100506385 | LINC01426 | HCC1 | Human | Liver | HCC | 1.60e-09 | 6.71e-01 | 0.5336 |
100506385 | LINC01426 | HCC2 | Human | Liver | HCC | 3.19e-14 | 1.03e+00 | 0.5341 |
100506385 | LINC01426 | HCC5 | Human | Liver | HCC | 4.22e-10 | 8.29e-01 | 0.4932 |
100506385 | LINC01426 | S014 | Human | Liver | HCC | 3.47e-12 | 3.90e-01 | 0.2254 |
100506385 | LINC01426 | S015 | Human | Liver | HCC | 9.18e-13 | 4.96e-01 | 0.2375 |
100506385 | LINC01426 | S016 | Human | Liver | HCC | 7.20e-11 | 3.63e-01 | 0.2243 |
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Tissue | Expression Dynamics | Abbreviation |
Liver | ![]() | HCC: Hepatocellular carcinoma |
NAFLD: Non-alcoholic fatty liver disease |
∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
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Malignant transformation related pathway analysis |
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Tissue | Disease Stage | Enriched GO biological Processes |
Colorectum | AD | ![]() |
Colorectum | SER | ![]() |
Colorectum | MSS | ![]() |
Colorectum | MSI-H | ![]() |
Colorectum | FAP | ![]() |
∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
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GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
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Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
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Cell-cell communication analysis |
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Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
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Single-cell gene regulatory network inference analysis |
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TF | Cell Type | Tissue | Disease Stage | Target Gene | RSS | Regulon Activity |
∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
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Somatic mutation of malignant transformation related genes |
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Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
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Related drugs of malignant transformation related genes |
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(DGIdb 4.0) |
Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
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