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Gene: LINC01139 |
Gene summary for LINC01139 |
 Gene summary. |
| Gene information | Species | Human | Gene symbol | LINC01139 | Gene ID | 339535 |
| Gene name | long intergenic non-protein coding RNA 1139 | |
| Gene Alias | LINK-A | |
| Cytomap | 1q43 | |
| Gene Type | ncRNA | GO ID | NA | UniProtAcc | NA |
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Malignant transformation analysis |
| Identification of the aberrant gene expression in precancerous and cancerous lesions by comparing the gene expression of stem-like cells in diseased tissues with normal stem cells |
| Malignant transformation involving gene list. |
| Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
| 339535 | LINC01139 | LZE8T | Human | Esophagus | ESCC | 2.36e-06 | 2.63e-01 | 0.067 |
| 339535 | LINC01139 | P2T-E | Human | Esophagus | ESCC | 2.20e-17 | 3.18e-01 | 0.1177 |
| 339535 | LINC01139 | P4T-E | Human | Esophagus | ESCC | 4.90e-05 | 1.54e-01 | 0.1323 |
| 339535 | LINC01139 | P8T-E | Human | Esophagus | ESCC | 2.06e-08 | 1.50e-01 | 0.0889 |
| 339535 | LINC01139 | P10T-E | Human | Esophagus | ESCC | 3.87e-34 | 5.28e-01 | 0.116 |
| 339535 | LINC01139 | P12T-E | Human | Esophagus | ESCC | 4.41e-07 | 1.43e-01 | 0.1122 |
| 339535 | LINC01139 | P15T-E | Human | Esophagus | ESCC | 2.22e-12 | 2.97e-01 | 0.1149 |
| 339535 | LINC01139 | P20T-E | Human | Esophagus | ESCC | 6.15e-13 | 2.65e-01 | 0.1124 |
| 339535 | LINC01139 | P22T-E | Human | Esophagus | ESCC | 1.25e-26 | 4.35e-01 | 0.1236 |
| 339535 | LINC01139 | P23T-E | Human | Esophagus | ESCC | 7.24e-11 | 3.98e-01 | 0.108 |
| 339535 | LINC01139 | P24T-E | Human | Esophagus | ESCC | 4.31e-06 | 1.66e-01 | 0.1287 |
| 339535 | LINC01139 | P26T-E | Human | Esophagus | ESCC | 4.44e-08 | 1.75e-01 | 0.1276 |
| 339535 | LINC01139 | P27T-E | Human | Esophagus | ESCC | 8.56e-12 | 2.51e-01 | 0.1055 |
| 339535 | LINC01139 | P32T-E | Human | Esophagus | ESCC | 9.53e-09 | 2.15e-01 | 0.1666 |
| 339535 | LINC01139 | P36T-E | Human | Esophagus | ESCC | 5.72e-04 | 1.46e-01 | 0.1187 |
| 339535 | LINC01139 | P42T-E | Human | Esophagus | ESCC | 5.07e-10 | 2.71e-01 | 0.1175 |
| 339535 | LINC01139 | P54T-E | Human | Esophagus | ESCC | 3.57e-04 | 1.27e-01 | 0.0975 |
| 339535 | LINC01139 | P56T-E | Human | Esophagus | ESCC | 2.55e-18 | 1.31e+00 | 0.1613 |
| 339535 | LINC01139 | P61T-E | Human | Esophagus | ESCC | 3.98e-08 | 1.92e-01 | 0.099 |
| 339535 | LINC01139 | P62T-E | Human | Esophagus | ESCC | 3.91e-33 | 6.02e-01 | 0.1302 |
| Page: 1 2 |
| Transcriptomic changes along malignancy continuum. |
| Tissue | Expression Dynamics | Abbreviation |
| Esophagus |  | ESCC: Esophageal squamous cell carcinoma |
| HGIN: High-grade intraepithelial neoplasias | ||
| LGIN: Low-grade intraepithelial neoplasias | ||
| Oral Cavity |  | EOLP: Erosive Oral lichen planus |
| LP: leukoplakia | ||
| NEOLP: Non-erosive oral lichen planus | ||
| OSCC: Oral squamous cell carcinoma |
| ∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
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Malignant transformation related pathway analysis |
| Find out the enriched GO biological processes and KEGG pathways involved in transition from healthy to precancer to cancer |
| Figure of enriched GO biological processes. |
| Tissue | Disease Stage | Enriched GO biological Processes |
| Colorectum | AD |  |
| Colorectum | SER |  |
| Colorectum | MSS |  |
| Colorectum | MSI-H |  |
| Colorectum | FAP |  |
| ∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
| Page: 1 2 3 4 5 6 7 8 9 |
| Enriched GO biological processes. |
| GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
| Page: 1 |
| Enriched KEGG pathways. |
| Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
| Page: 1 |
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Cell-cell communication analysis |
| Identification of potential cell-cell interactions between two cell types and their ligand-receptor pairs for different disease states |
| Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
| Page: 1 |
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Single-cell gene regulatory network inference analysis |
| Find out the significant the regulons (TFs) and the target genes of each regulon across cell types for different disease states |
| TF | Cell Type | Tissue | Disease Stage | Target Gene | RSS | Regulon Activity |
| ∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
| Page: 1 |
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Somatic mutation of malignant transformation related genes |
| Annotation of somatic variants for genes involved in malignant transformation |
| Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
| Page: 1 |
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Related drugs of malignant transformation related genes |
| Identification of chemicals and drugs interact with genes involved in malignant transfromation |
| (DGIdb 4.0) |
| Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
| Page: 1 |
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