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Gene: LINC00936 |
Gene summary for LINC00936 |
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Gene information | Species | Human | Gene symbol | LINC00936 | Gene ID | 338758 |
Gene name | ATP2B1 antisense RNA 1 | |
Gene Alias | LINC00936 | |
Cytomap | 12q21.33 | |
Gene Type | ncRNA | GO ID | NA | UniProtAcc | NA |
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Malignant transformation analysis |
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Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
338758 | LINC00936 | P1T-E | Human | Esophagus | ESCC | 8.55e-10 | 4.06e-01 | 0.0875 |
338758 | LINC00936 | P2T-E | Human | Esophagus | ESCC | 1.76e-12 | 2.43e-01 | 0.1177 |
338758 | LINC00936 | P4T-E | Human | Esophagus | ESCC | 8.09e-09 | 1.84e-01 | 0.1323 |
338758 | LINC00936 | P5T-E | Human | Esophagus | ESCC | 4.44e-08 | 1.68e-01 | 0.1327 |
338758 | LINC00936 | P8T-E | Human | Esophagus | ESCC | 8.40e-04 | 9.17e-02 | 0.0889 |
338758 | LINC00936 | P9T-E | Human | Esophagus | ESCC | 1.92e-10 | 2.46e-01 | 0.1131 |
338758 | LINC00936 | P10T-E | Human | Esophagus | ESCC | 2.05e-07 | 1.57e-01 | 0.116 |
338758 | LINC00936 | P12T-E | Human | Esophagus | ESCC | 5.79e-16 | 2.08e-01 | 0.1122 |
338758 | LINC00936 | P15T-E | Human | Esophagus | ESCC | 6.51e-03 | 9.72e-02 | 0.1149 |
338758 | LINC00936 | P16T-E | Human | Esophagus | ESCC | 6.71e-12 | 2.28e-01 | 0.1153 |
338758 | LINC00936 | P20T-E | Human | Esophagus | ESCC | 6.87e-08 | 1.52e-01 | 0.1124 |
338758 | LINC00936 | P22T-E | Human | Esophagus | ESCC | 4.76e-12 | 1.36e-01 | 0.1236 |
338758 | LINC00936 | P23T-E | Human | Esophagus | ESCC | 3.42e-08 | 2.10e-01 | 0.108 |
338758 | LINC00936 | P24T-E | Human | Esophagus | ESCC | 3.50e-02 | 4.93e-02 | 0.1287 |
338758 | LINC00936 | P26T-E | Human | Esophagus | ESCC | 3.87e-34 | 5.87e-01 | 0.1276 |
338758 | LINC00936 | P27T-E | Human | Esophagus | ESCC | 9.00e-11 | 2.50e-01 | 0.1055 |
338758 | LINC00936 | P28T-E | Human | Esophagus | ESCC | 6.62e-20 | 3.49e-01 | 0.1149 |
338758 | LINC00936 | P30T-E | Human | Esophagus | ESCC | 4.36e-12 | 4.24e-01 | 0.137 |
338758 | LINC00936 | P31T-E | Human | Esophagus | ESCC | 2.02e-06 | 9.62e-02 | 0.1251 |
338758 | LINC00936 | P32T-E | Human | Esophagus | ESCC | 6.62e-20 | 4.11e-01 | 0.1666 |
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Tissue | Expression Dynamics | Abbreviation |
Esophagus | ![]() | ESCC: Esophageal squamous cell carcinoma |
HGIN: High-grade intraepithelial neoplasias | ||
LGIN: Low-grade intraepithelial neoplasias |
∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
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Malignant transformation related pathway analysis |
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Tissue | Disease Stage | Enriched GO biological Processes |
Colorectum | AD | ![]() |
Colorectum | SER | ![]() |
Colorectum | MSS | ![]() |
Colorectum | MSI-H | ![]() |
Colorectum | FAP | ![]() |
∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
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GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
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Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
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Cell-cell communication analysis |
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Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
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Single-cell gene regulatory network inference analysis |
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TF | Cell Type | Tissue | Disease Stage | Target Gene | RSS | Regulon Activity |
∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
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Somatic mutation of malignant transformation related genes |
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Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
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Related drugs of malignant transformation related genes |
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(DGIdb 4.0) |
Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
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