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Gene: LINC00668 |
Gene summary for LINC00668 |
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Gene information | Species | Human | Gene symbol | LINC00668 | Gene ID | 400643 |
Gene name | long intergenic non-protein coding RNA 668 | |
Gene Alias | LINC00668 | |
Cytomap | 18p11.31 | |
Gene Type | ncRNA | GO ID | NA | UniProtAcc | NA |
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Malignant transformation analysis |
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Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
400643 | LINC00668 | HTA11_3410_2000001011 | Human | Colorectum | AD | 8.50e-09 | 4.44e-01 | 0.0155 |
400643 | LINC00668 | HTA11_2487_2000001011 | Human | Colorectum | SER | 1.72e-07 | 5.99e-01 | -0.1808 |
400643 | LINC00668 | HTA11_1938_2000001011 | Human | Colorectum | AD | 6.46e-12 | 8.41e-01 | -0.0811 |
400643 | LINC00668 | HTA11_78_2000001011 | Human | Colorectum | AD | 1.97e-05 | 7.25e-01 | -0.1088 |
400643 | LINC00668 | HTA11_347_2000001011 | Human | Colorectum | AD | 2.56e-03 | 5.84e-01 | -0.1954 |
400643 | LINC00668 | HTA11_83_2000001011 | Human | Colorectum | SER | 6.38e-18 | 1.14e+00 | -0.1526 |
400643 | LINC00668 | HTA11_1391_2000001011 | Human | Colorectum | AD | 9.75e-08 | 6.95e-01 | -0.059 |
400643 | LINC00668 | HTA11_546_2000001011 | Human | Colorectum | AD | 3.90e-03 | 6.29e-01 | -0.0842 |
400643 | LINC00668 | HTA11_866_3004761011 | Human | Colorectum | AD | 1.81e-02 | 4.69e-01 | 0.096 |
400643 | LINC00668 | HTA11_10623_2000001011 | Human | Colorectum | AD | 1.01e-10 | 1.03e+00 | -0.0177 |
400643 | LINC00668 | HTA11_99999971662_82457 | Human | Colorectum | MSS | 3.66e-05 | 4.92e-01 | 0.3859 |
400643 | LINC00668 | HTA11_99999974143_84620 | Human | Colorectum | MSS | 1.20e-02 | -2.35e-01 | 0.3005 |
400643 | LINC00668 | A015-C-203 | Human | Colorectum | FAP | 1.98e-04 | -9.88e-02 | -0.1294 |
400643 | LINC00668 | A001-C-119 | Human | Colorectum | FAP | 2.93e-02 | -2.35e-01 | -0.1557 |
400643 | LINC00668 | A001-C-108 | Human | Colorectum | FAP | 2.61e-02 | -1.40e-01 | -0.0272 |
400643 | LINC00668 | A002-C-205 | Human | Colorectum | FAP | 2.22e-05 | -2.24e-01 | -0.1236 |
400643 | LINC00668 | A015-C-006 | Human | Colorectum | FAP | 1.93e-02 | -2.19e-01 | -0.0994 |
400643 | LINC00668 | A002-C-114 | Human | Colorectum | FAP | 2.57e-02 | -1.66e-01 | -0.1561 |
400643 | LINC00668 | A015-C-104 | Human | Colorectum | FAP | 2.40e-05 | -1.31e-01 | -0.1899 |
400643 | LINC00668 | A002-C-016 | Human | Colorectum | FAP | 1.55e-02 | -1.32e-01 | 0.0521 |
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∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
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Malignant transformation related pathway analysis |
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Tissue | Disease Stage | Enriched GO biological Processes |
Colorectum | AD | ![]() |
Colorectum | SER | ![]() |
Colorectum | MSS | ![]() |
Colorectum | MSI-H | ![]() |
Colorectum | FAP | ![]() |
∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
Page: 1 2 3 4 5 6 7 8 9 |
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GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
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Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
Page: 1 |
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Cell-cell communication analysis |
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Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
Page: 1 |
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Single-cell gene regulatory network inference analysis |
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TF | Cell Type | Tissue | Disease Stage | Target Gene | RSS | Regulon Activity |
∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
Page: 1 |
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Somatic mutation of malignant transformation related genes |
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Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
Page: 1 |
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Related drugs of malignant transformation related genes |
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(DGIdb 4.0) |
Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
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