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Gene: LINC00623 |
Gene summary for LINC00623 |
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Gene information | Species | Human | Gene symbol | LINC00623 | Gene ID | 728855 |
Gene name | long intergenic non-protein coding RNA 623 | |
Gene Alias | CH17-118O6.2 | |
Cytomap | 1p11.2 | |
Gene Type | ncRNA | GO ID | NA | UniProtAcc | NA |
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Malignant transformation analysis |
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Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
728855 | LINC00623 | CCI_1 | Human | Cervix | CC | 2.30e-07 | 3.46e-01 | 0.528 |
728855 | LINC00623 | CCI_2 | Human | Cervix | CC | 6.66e-14 | 6.07e-01 | 0.5249 |
728855 | LINC00623 | CCI_3 | Human | Cervix | CC | 6.95e-21 | 6.11e-01 | 0.516 |
728855 | LINC00623 | sample1 | Human | Cervix | CC | 8.36e-10 | 2.56e-01 | 0.0959 |
728855 | LINC00623 | H2 | Human | Cervix | HSIL_HPV | 4.13e-06 | 1.42e-01 | 0.0632 |
728855 | LINC00623 | T1 | Human | Cervix | CC | 2.01e-09 | 1.80e-01 | 0.0918 |
728855 | LINC00623 | T2 | Human | Cervix | CC | 1.77e-05 | 2.15e-01 | 0.0709 |
728855 | LINC00623 | LZE24T | Human | Esophagus | ESCC | 1.59e-05 | 2.21e-01 | 0.0596 |
728855 | LINC00623 | P8T-E | Human | Esophagus | ESCC | 5.62e-18 | 2.93e-01 | 0.0889 |
728855 | LINC00623 | P11T-E | Human | Esophagus | ESCC | 9.13e-07 | 2.14e-01 | 0.1426 |
728855 | LINC00623 | P17T-E | Human | Esophagus | ESCC | 4.73e-03 | 1.52e-01 | 0.1278 |
728855 | LINC00623 | P19T-E | Human | Esophagus | ESCC | 1.32e-02 | 2.76e-01 | 0.1662 |
728855 | LINC00623 | P22T-E | Human | Esophagus | ESCC | 3.25e-04 | 6.00e-02 | 0.1236 |
728855 | LINC00623 | P24T-E | Human | Esophagus | ESCC | 3.43e-22 | 5.40e-01 | 0.1287 |
728855 | LINC00623 | P28T-E | Human | Esophagus | ESCC | 3.21e-02 | 2.54e-02 | 0.1149 |
728855 | LINC00623 | P32T-E | Human | Esophagus | ESCC | 3.73e-04 | 7.72e-02 | 0.1666 |
728855 | LINC00623 | P37T-E | Human | Esophagus | ESCC | 1.08e-07 | 1.56e-01 | 0.1371 |
728855 | LINC00623 | P39T-E | Human | Esophagus | ESCC | 4.81e-03 | 6.51e-02 | 0.0894 |
728855 | LINC00623 | P42T-E | Human | Esophagus | ESCC | 2.49e-06 | 2.04e-01 | 0.1175 |
728855 | LINC00623 | P52T-E | Human | Esophagus | ESCC | 6.83e-09 | 1.42e-01 | 0.1555 |
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∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
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Malignant transformation related pathway analysis |
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Tissue | Disease Stage | Enriched GO biological Processes |
Colorectum | AD | ![]() |
Colorectum | SER | ![]() |
Colorectum | MSS | ![]() |
Colorectum | MSI-H | ![]() |
Colorectum | FAP | ![]() |
∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
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GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
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Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
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Cell-cell communication analysis |
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Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
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Single-cell gene regulatory network inference analysis |
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TF | Cell Type | Tissue | Disease Stage | Target Gene | RSS | Regulon Activity |
∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
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Somatic mutation of malignant transformation related genes |
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Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
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Related drugs of malignant transformation related genes |
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(DGIdb 4.0) |
Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
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