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Gene: LINC00513 |
Gene summary for LINC00513 |
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Gene information | Species | Human | Gene symbol | LINC00513 | Gene ID | 100506860 |
Gene name | long intergenic non-protein coding RNA 513 | |
Gene Alias | LINC00513 | |
Cytomap | 7q32.3 | |
Gene Type | ncRNA | GO ID | NA | UniProtAcc | NA |
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Malignant transformation analysis |
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Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
100506860 | LINC00513 | AEH-subject1 | Human | Endometrium | AEH | 4.01e-09 | 2.36e-01 | -0.3059 |
100506860 | LINC00513 | AEH-subject2 | Human | Endometrium | AEH | 2.45e-05 | 1.76e-01 | -0.2525 |
100506860 | LINC00513 | AEH-subject3 | Human | Endometrium | AEH | 3.87e-05 | 2.00e-01 | -0.2576 |
100506860 | LINC00513 | AEH-subject4 | Human | Endometrium | AEH | 9.92e-20 | 5.04e-01 | -0.2657 |
100506860 | LINC00513 | AEH-subject5 | Human | Endometrium | AEH | 1.66e-03 | 1.57e-01 | -0.2953 |
100506860 | LINC00513 | EEC-subject1 | Human | Endometrium | EEC | 1.69e-11 | 2.90e-01 | -0.2682 |
100506860 | LINC00513 | EEC-subject3 | Human | Endometrium | EEC | 2.24e-16 | 4.78e-01 | -0.2525 |
100506860 | LINC00513 | EEC-subject4 | Human | Endometrium | EEC | 4.35e-17 | 3.96e-01 | -0.2571 |
100506860 | LINC00513 | GSM5276934 | Human | Endometrium | EEC | 1.92e-21 | 4.32e-01 | -0.0913 |
100506860 | LINC00513 | GSM5276937 | Human | Endometrium | EEC | 5.05e-07 | 1.71e-01 | -0.0897 |
100506860 | LINC00513 | NAFLD1 | Human | Liver | NAFLD | 1.64e-02 | 3.43e-01 | -0.04 |
100506860 | LINC00513 | HCC1_Meng | Human | Liver | HCC | 4.06e-02 | -5.94e-02 | 0.0246 |
100506860 | LINC00513 | cirrhotic1 | Human | Liver | Cirrhotic | 4.06e-02 | -5.94e-02 | 0.0202 |
100506860 | LINC00513 | Pt14.d | Human | Liver | HCC | 4.06e-02 | -5.94e-02 | 0.0143 |
100506860 | LINC00513 | S028 | Human | Liver | HCC | 7.84e-12 | 6.79e-01 | 0.2503 |
100506860 | LINC00513 | S029 | Human | Liver | HCC | 1.50e-19 | 1.18e+00 | 0.2581 |
100506860 | LINC00513 | RNA-P17T-P17T-2 | Human | Lung | IAC | 6.80e-05 | 6.37e-01 | 0.3371 |
100506860 | LINC00513 | RNA-P17T-P17T-4 | Human | Lung | IAC | 4.28e-05 | 6.53e-01 | 0.343 |
100506860 | LINC00513 | RNA-P17T-P17T-6 | Human | Lung | IAC | 1.13e-06 | 8.70e-01 | 0.3385 |
100506860 | LINC00513 | RNA-P17T-P17T-8 | Human | Lung | IAC | 1.41e-10 | 1.08e+00 | 0.3329 |
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∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
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Malignant transformation related pathway analysis |
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Tissue | Disease Stage | Enriched GO biological Processes |
Colorectum | AD | ![]() |
Colorectum | SER | ![]() |
Colorectum | MSS | ![]() |
Colorectum | MSI-H | ![]() |
Colorectum | FAP | ![]() |
∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
Page: 1 2 3 4 5 6 7 8 9 |
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GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
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Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
Page: 1 |
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Cell-cell communication analysis |
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Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
Page: 1 |
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Single-cell gene regulatory network inference analysis |
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TF | Cell Type | Tissue | Disease Stage | Target Gene | RSS | Regulon Activity |
∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
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Somatic mutation of malignant transformation related genes |
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Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
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Related drugs of malignant transformation related genes |
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(DGIdb 4.0) |
Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
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