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Gene: LINC00116 |
Gene summary for LINC00116 |
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Gene information | Species | Human | Gene symbol | LINC00116 | Gene ID | 205251 |
Gene name | mitoregulin | |
Gene Alias | LEMP | |
Cytomap | 2q13 | |
Gene Type | protein-coding | GO ID | GO:0006082 | UniProtAcc | NA |
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Malignant transformation analysis |
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Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
205251 | LINC00116 | P1T-E | Human | Esophagus | ESCC | 1.34e-14 | 7.97e-01 | 0.0875 |
205251 | LINC00116 | P2T-E | Human | Esophagus | ESCC | 4.66e-25 | 4.39e-01 | 0.1177 |
205251 | LINC00116 | P4T-E | Human | Esophagus | ESCC | 1.05e-43 | 1.14e+00 | 0.1323 |
205251 | LINC00116 | P5T-E | Human | Esophagus | ESCC | 2.60e-52 | 8.83e-01 | 0.1327 |
205251 | LINC00116 | P8T-E | Human | Esophagus | ESCC | 1.05e-53 | 9.71e-01 | 0.0889 |
205251 | LINC00116 | P9T-E | Human | Esophagus | ESCC | 4.01e-51 | 1.28e+00 | 0.1131 |
205251 | LINC00116 | P10T-E | Human | Esophagus | ESCC | 3.21e-83 | 1.27e+00 | 0.116 |
205251 | LINC00116 | P11T-E | Human | Esophagus | ESCC | 1.71e-07 | 3.10e-01 | 0.1426 |
205251 | LINC00116 | P12T-E | Human | Esophagus | ESCC | 8.04e-42 | 7.29e-01 | 0.1122 |
205251 | LINC00116 | P15T-E | Human | Esophagus | ESCC | 2.63e-36 | 8.95e-01 | 0.1149 |
205251 | LINC00116 | P16T-E | Human | Esophagus | ESCC | 3.67e-20 | 2.56e-01 | 0.1153 |
205251 | LINC00116 | P17T-E | Human | Esophagus | ESCC | 1.60e-16 | 6.31e-01 | 0.1278 |
205251 | LINC00116 | P19T-E | Human | Esophagus | ESCC | 1.14e-11 | 1.35e+00 | 0.1662 |
205251 | LINC00116 | P20T-E | Human | Esophagus | ESCC | 4.75e-29 | 4.61e-01 | 0.1124 |
205251 | LINC00116 | P21T-E | Human | Esophagus | ESCC | 8.09e-33 | 5.68e-01 | 0.1617 |
205251 | LINC00116 | P22T-E | Human | Esophagus | ESCC | 9.51e-50 | 6.80e-01 | 0.1236 |
205251 | LINC00116 | P23T-E | Human | Esophagus | ESCC | 3.17e-35 | 9.71e-01 | 0.108 |
205251 | LINC00116 | P24T-E | Human | Esophagus | ESCC | 7.07e-34 | 7.02e-01 | 0.1287 |
205251 | LINC00116 | P26T-E | Human | Esophagus | ESCC | 3.34e-54 | 9.31e-01 | 0.1276 |
205251 | LINC00116 | P27T-E | Human | Esophagus | ESCC | 1.41e-33 | 4.99e-01 | 0.1055 |
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∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
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Malignant transformation related pathway analysis |
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Tissue | Disease Stage | Enriched GO biological Processes |
Colorectum | AD | ![]() |
Colorectum | SER | ![]() |
Colorectum | MSS | ![]() |
Colorectum | MSI-H | ![]() |
Colorectum | FAP | ![]() |
∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
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GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
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Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
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Cell-cell communication analysis |
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Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
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Single-cell gene regulatory network inference analysis |
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TF | Cell Type | Tissue | Disease Stage | Target Gene | RSS | Regulon Activity |
∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
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Somatic mutation of malignant transformation related genes |
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Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
LINC00116 | SNV | Missense_Mutation | novel | c.283N>A | p.Val95Met | p.V95M | Q8NCU8 | protein_coding | deleterious_low_confidence(0.02) | possibly_damaging(0.865) | TCGA-EO-A22U-01 | Endometrium | uterine corpus endometrioid carcinoma | Female | >=65 | I/II | Unknown | Unknown | SD |
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Related drugs of malignant transformation related genes |
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(DGIdb 4.0) |
Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
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