![]() |
|||||
|
![]() | |
![]() | |
![]() | |
![]() | |
![]() | |
![]() | |
![]() |
Gene: LINC00094 |
Gene summary for LINC00094 |
![]() |
Gene information | Species | Human | Gene symbol | LINC00094 | Gene ID | 266655 |
Gene name | BRD3 opposite strand | |
Gene Alias | LINC00094 | |
Cytomap | 9q34.2 | |
Gene Type | protein-coding | GO ID | NA | UniProtAcc | NA |
Top |
Malignant transformation analysis |
![]() |
![]() |
Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
266655 | LINC00094 | P2T-E | Human | Esophagus | ESCC | 8.73e-28 | 4.29e-01 | 0.1177 |
266655 | LINC00094 | P4T-E | Human | Esophagus | ESCC | 4.53e-04 | 1.66e-01 | 0.1323 |
266655 | LINC00094 | P5T-E | Human | Esophagus | ESCC | 3.26e-05 | 1.16e-01 | 0.1327 |
266655 | LINC00094 | P8T-E | Human | Esophagus | ESCC | 5.91e-06 | 1.74e-01 | 0.0889 |
266655 | LINC00094 | P9T-E | Human | Esophagus | ESCC | 2.62e-03 | 1.52e-01 | 0.1131 |
266655 | LINC00094 | P10T-E | Human | Esophagus | ESCC | 8.56e-12 | 2.42e-01 | 0.116 |
266655 | LINC00094 | P11T-E | Human | Esophagus | ESCC | 3.42e-08 | 3.65e-01 | 0.1426 |
266655 | LINC00094 | P12T-E | Human | Esophagus | ESCC | 1.83e-06 | 7.51e-02 | 0.1122 |
266655 | LINC00094 | P15T-E | Human | Esophagus | ESCC | 9.73e-04 | 1.16e-01 | 0.1149 |
266655 | LINC00094 | P16T-E | Human | Esophagus | ESCC | 3.26e-13 | 2.66e-01 | 0.1153 |
266655 | LINC00094 | P17T-E | Human | Esophagus | ESCC | 5.30e-03 | 1.82e-01 | 0.1278 |
266655 | LINC00094 | P19T-E | Human | Esophagus | ESCC | 4.82e-03 | 2.90e-01 | 0.1662 |
266655 | LINC00094 | P21T-E | Human | Esophagus | ESCC | 1.73e-32 | 5.65e-01 | 0.1617 |
266655 | LINC00094 | P22T-E | Human | Esophagus | ESCC | 9.56e-19 | 4.04e-01 | 0.1236 |
266655 | LINC00094 | P23T-E | Human | Esophagus | ESCC | 1.08e-03 | 1.17e-01 | 0.108 |
266655 | LINC00094 | P24T-E | Human | Esophagus | ESCC | 1.87e-13 | 1.25e-01 | 0.1287 |
266655 | LINC00094 | P26T-E | Human | Esophagus | ESCC | 1.03e-17 | 1.31e-01 | 0.1276 |
266655 | LINC00094 | P27T-E | Human | Esophagus | ESCC | 8.96e-05 | 1.44e-01 | 0.1055 |
266655 | LINC00094 | P28T-E | Human | Esophagus | ESCC | 2.52e-04 | 1.04e-01 | 0.1149 |
266655 | LINC00094 | P30T-E | Human | Esophagus | ESCC | 6.37e-10 | 3.56e-01 | 0.137 |
Page: 1 2 3 |
![]() |
∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
Top |
Malignant transformation related pathway analysis |
![]() |
![]() |
Tissue | Disease Stage | Enriched GO biological Processes |
Colorectum | AD | ![]() |
Colorectum | SER | ![]() |
Colorectum | MSS | ![]() |
Colorectum | MSI-H | ![]() |
Colorectum | FAP | ![]() |
∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
Page: 1 2 3 4 5 6 7 8 9 |
![]() |
GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
Page: 1 |
![]() |
Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
Page: 1 |
Top |
Cell-cell communication analysis |
![]() |
Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
Page: 1 |
Top |
Single-cell gene regulatory network inference analysis |
![]() |
TF | Cell Type | Tissue | Disease Stage | Target Gene | RSS | Regulon Activity |
∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
Page: 1 |
Top |
Somatic mutation of malignant transformation related genes |
![]() |
Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
Page: 1 |
Top |
Related drugs of malignant transformation related genes |
![]() |
(DGIdb 4.0) |
Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
Page: 1 |