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Gene: IL4I1 |
Gene summary for IL4I1 |
 Gene summary. |
| Gene information | Species | Human | Gene symbol | IL4I1 | Gene ID | 259307 |
| Gene name | interleukin 4 induced 1 | |
| Gene Alias | FIG1 | |
| Cytomap | 19q13.33 | |
| Gene Type | protein-coding | GO ID | GO:0001775 | UniProtAcc | Q96RQ9 |
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Malignant transformation analysis |
| Identification of the aberrant gene expression in precancerous and cancerous lesions by comparing the gene expression of stem-like cells in diseased tissues with normal stem cells |
| Malignant transformation involving gene list. |
| Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
| 259307 | IL4I1 | PTCwithHT_6 | Human | Thyroid | HT | 4.82e-02 | 1.66e-01 | 0.02 |
| 259307 | IL4I1 | ATC09 | Human | Thyroid | ATC | 6.36e-27 | 7.54e-01 | 0.2871 |
| 259307 | IL4I1 | ATC12 | Human | Thyroid | ATC | 5.14e-03 | 1.16e-01 | 0.34 |
| 259307 | IL4I1 | ATC1 | Human | Thyroid | ATC | 1.78e-27 | 8.14e-01 | 0.2878 |
| 259307 | IL4I1 | ATC4 | Human | Thyroid | ATC | 1.97e-05 | 1.87e-01 | 0.34 |
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| Transcriptomic changes along malignancy continuum. |
| Tissue | Expression Dynamics | Abbreviation |
| Thyroid |  | ATC: Anaplastic thyroid cancer |
| HT: Hashimoto's thyroiditis | ||
| PTC: Papillary thyroid cancer |
| ∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
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Malignant transformation related pathway analysis |
| Find out the enriched GO biological processes and KEGG pathways involved in transition from healthy to precancer to cancer |
| Figure of enriched GO biological processes. |
| Tissue | Disease Stage | Enriched GO biological Processes |
| Colorectum | AD |  |
| Colorectum | SER |  |
| Colorectum | MSS |  |
| Colorectum | MSI-H |  |
| Colorectum | FAP |  |
| ∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
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| Enriched GO biological processes. |
| GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
| GO:005086319 | Thyroid | HT | regulation of T cell activation | 51/1272 | 329/18723 | 2.58e-08 | 1.97e-06 | 51 |
| GO:004578530 | Thyroid | HT | positive regulation of cell adhesion | 62/1272 | 437/18723 | 2.61e-08 | 1.97e-06 | 62 |
| GO:002240726 | Thyroid | HT | regulation of cell-cell adhesion | 63/1272 | 448/18723 | 2.83e-08 | 2.07e-06 | 63 |
| GO:000715920 | Thyroid | HT | leukocyte cell-cell adhesion | 54/1272 | 371/18723 | 8.84e-08 | 5.23e-06 | 54 |
| GO:190303720 | Thyroid | HT | regulation of leukocyte cell-cell adhesion | 49/1272 | 336/18723 | 3.27e-07 | 1.52e-05 | 49 |
| GO:005087018 | Thyroid | HT | positive regulation of T cell activation | 36/1272 | 216/18723 | 4.86e-07 | 2.11e-05 | 36 |
| GO:00512519 | Thyroid | HT | positive regulation of lymphocyte activation | 51/1272 | 362/18723 | 5.57e-07 | 2.38e-05 | 51 |
| GO:004211020 | Thyroid | HT | T cell activation | 63/1272 | 487/18723 | 5.95e-07 | 2.51e-05 | 63 |
| GO:000269610 | Thyroid | HT | positive regulation of leukocyte activation | 55/1272 | 409/18723 | 9.17e-07 | 3.70e-05 | 55 |
| GO:00508679 | Thyroid | HT | positive regulation of cell activation | 55/1272 | 420/18723 | 2.11e-06 | 7.61e-05 | 55 |
| GO:002240924 | Thyroid | HT | positive regulation of cell-cell adhesion | 41/1272 | 284/18723 | 3.80e-06 | 1.24e-04 | 41 |
| GO:004212917 | Thyroid | HT | regulation of T cell proliferation | 29/1272 | 171/18723 | 4.30e-06 | 1.39e-04 | 29 |
| GO:004209819 | Thyroid | HT | T cell proliferation | 32/1272 | 199/18723 | 4.53e-06 | 1.45e-04 | 32 |
| GO:007066110 | Thyroid | HT | leukocyte proliferation | 44/1272 | 318/18723 | 5.29e-06 | 1.64e-04 | 44 |
| GO:190303919 | Thyroid | HT | positive regulation of leukocyte cell-cell adhesion | 36/1272 | 239/18723 | 5.54e-06 | 1.68e-04 | 36 |
| GO:19031319 | Thyroid | HT | mononuclear cell differentiation | 54/1272 | 426/18723 | 6.88e-06 | 2.00e-04 | 54 |
| GO:007066317 | Thyroid | HT | regulation of leukocyte proliferation | 36/1272 | 245/18723 | 9.78e-06 | 2.69e-04 | 36 |
| GO:00466519 | Thyroid | HT | lymphocyte proliferation | 40/1272 | 288/18723 | 1.27e-05 | 3.30e-04 | 40 |
| GO:00329438 | Thyroid | HT | mononuclear cell proliferation | 40/1272 | 291/18723 | 1.63e-05 | 3.95e-04 | 40 |
| GO:190370627 | Thyroid | HT | regulation of hemopoiesis | 47/1272 | 367/18723 | 2.05e-05 | 4.68e-04 | 47 |
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| Enriched KEGG pathways. |
| Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
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Cell-cell communication analysis |
| Identification of potential cell-cell interactions between two cell types and their ligand-receptor pairs for different disease states |
| Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
| Page: 1 |
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Single-cell gene regulatory network inference analysis |
| Find out the significant the regulons (TFs) and the target genes of each regulon across cell types for different disease states |
| TF | Cell Type | Tissue | Disease Stage | Target Gene | RSS | Regulon Activity |
| ∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
| Page: 1 |
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Somatic mutation of malignant transformation related genes |
| Annotation of somatic variants for genes involved in malignant transformation |
| Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
| IL4I1 | SNV | Missense_Mutation | novel | c.1664N>G | p.Val555Gly | p.V555G | Q96RQ9 | protein_coding | tolerated_low_confidence(0.07) | benign(0.017) | TCGA-A2-A0T5-01 | Breast | breast invasive carcinoma | Female | <65 | I/II | Unspecific | Taxotere | SD |
| IL4I1 | SNV | Missense_Mutation | novel | c.1502N>A | p.Ala501Asp | p.A501D | Q96RQ9 | protein_coding | deleterious(0) | probably_damaging(0.999) | TCGA-A2-A0YK-01 | Breast | breast invasive carcinoma | Female | <65 | I/II | Chemotherapy | cytoxan | SD |
| IL4I1 | SNV | Missense_Mutation | novel | c.1664N>G | p.Val555Gly | p.V555G | Q96RQ9 | protein_coding | tolerated_low_confidence(0.07) | benign(0.017) | TCGA-E9-A1RE-01 | Breast | breast invasive carcinoma | Female | >=65 | III/IV | Hormone Therapy | tamoxiphen | SD |
| IL4I1 | SNV | Missense_Mutation | rs141664132 | c.149N>A | p.Arg50His | p.R50H | Q96RQ9 | protein_coding | tolerated(0.68) | benign(0) | TCGA-JX-A3Q0-01 | Cervix | cervical & endocervical cancer | Female | <65 | III/IV | Unknown | Unknown | SD |
| IL4I1 | insertion | Frame_Shift_Ins | novel | c.397dupG | p.Glu133GlyfsTer97 | p.E133Gfs*97 | Q96RQ9 | protein_coding | TCGA-EA-A410-01 | Cervix | cervical & endocervical cancer | Female | <65 | I/II | Unknown | Unknown | SD | ||
| IL4I1 | SNV | Missense_Mutation | c.1207N>T | p.Arg403Cys | p.R403C | Q96RQ9 | protein_coding | deleterious(0.02) | probably_damaging(1) | TCGA-A6-2686-01 | Colorectum | colon adenocarcinoma | Female | >=65 | I/II | Unknown | Unknown | SD | |
| IL4I1 | SNV | Missense_Mutation | c.1442N>A | p.Pro481Gln | p.P481Q | Q96RQ9 | protein_coding | deleterious(0) | probably_damaging(0.994) | TCGA-A6-6780-01 | Colorectum | colon adenocarcinoma | Male | >=65 | I/II | Unknown | Unknown | SD | |
| IL4I1 | SNV | Missense_Mutation | rs369942631 | c.517G>A | p.Glu173Lys | p.E173K | Q96RQ9 | protein_coding | tolerated(0.05) | benign(0.143) | TCGA-AD-6895-01 | Colorectum | colon adenocarcinoma | Male | >=65 | III/IV | Unknown | Unknown | SD |
| IL4I1 | SNV | Missense_Mutation | novel | c.515N>C | p.His172Pro | p.H172P | Q96RQ9 | protein_coding | deleterious(0) | benign(0.284) | TCGA-AM-5821-01 | Colorectum | colon adenocarcinoma | Female | >=65 | I/II | Unknown | Unknown | SD |
| IL4I1 | SNV | Missense_Mutation | c.614N>G | p.Tyr205Cys | p.Y205C | Q96RQ9 | protein_coding | deleterious(0.01) | possibly_damaging(0.87) | TCGA-CA-6718-01 | Colorectum | colon adenocarcinoma | Male | <65 | I/II | Unknown | Unknown | PD |
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Related drugs of malignant transformation related genes |
| Identification of chemicals and drugs interact with genes involved in malignant transfromation |
| (DGIdb 4.0) |
| Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
| Page: 1 |
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