|
|||||
|
 | |
| |
| |
| |
| |
| |
|
Gene: H2AJ |
Gene summary for H2AJ |
 Gene summary. |
| Gene information | Species | Human | Gene symbol | H2AJ | Gene ID | 55766 |
| Gene name | H2A.J histone | |
| Gene Alias | H2AFJ | |
| Cytomap | 12p12.3 | |
| Gene Type | protein-coding | GO ID | GO:0008150 | UniProtAcc | A0A024RAS2 |
Top |
Malignant transformation analysis |
| Identification of the aberrant gene expression in precancerous and cancerous lesions by comparing the gene expression of stem-like cells in diseased tissues with normal stem cells |
| Malignant transformation involving gene list. |
| Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
| 55766 | H2AJ | CA_HPV_1 | Human | Cervix | CC | 1.41e-07 | -2.46e-01 | 0.0264 |
| 55766 | H2AJ | CCI_1 | Human | Cervix | CC | 1.93e-06 | -5.26e-01 | 0.528 |
| 55766 | H2AJ | CCI_2 | Human | Cervix | CC | 8.18e-06 | -5.26e-01 | 0.5249 |
| 55766 | H2AJ | CCI_3 | Human | Cervix | CC | 5.72e-09 | -5.26e-01 | 0.516 |
| 55766 | H2AJ | CCII_1 | Human | Cervix | CC | 7.66e-13 | -5.26e-01 | 0.3249 |
| 55766 | H2AJ | Tumor | Human | Cervix | CC | 1.30e-32 | -5.26e-01 | 0.1241 |
| 55766 | H2AJ | sample1 | Human | Cervix | CC | 1.45e-10 | -5.26e-01 | 0.0959 |
| 55766 | H2AJ | sample3 | Human | Cervix | CC | 1.30e-32 | -5.26e-01 | 0.1387 |
| 55766 | H2AJ | H2 | Human | Cervix | HSIL_HPV | 5.21e-31 | -5.26e-01 | 0.0632 |
| 55766 | H2AJ | L1 | Human | Cervix | CC | 3.46e-14 | -5.26e-01 | 0.0802 |
| 55766 | H2AJ | T1 | Human | Cervix | CC | 5.04e-24 | -5.26e-01 | 0.0918 |
| 55766 | H2AJ | T2 | Human | Cervix | CC | 1.97e-05 | -5.26e-01 | 0.0709 |
| 55766 | H2AJ | T3 | Human | Cervix | CC | 3.29e-32 | -5.26e-01 | 0.1389 |
| 55766 | H2AJ | HTA11_3410_2000001011 | Human | Colorectum | AD | 6.00e-08 | 1.74e-01 | 0.0155 |
| 55766 | H2AJ | HTA11_2487_2000001011 | Human | Colorectum | SER | 1.36e-22 | 5.68e-01 | -0.1808 |
| 55766 | H2AJ | HTA11_2951_2000001011 | Human | Colorectum | AD | 3.34e-04 | 3.08e-01 | 0.0216 |
| 55766 | H2AJ | HTA11_1938_2000001011 | Human | Colorectum | AD | 7.36e-22 | 5.54e-01 | -0.0811 |
| 55766 | H2AJ | HTA11_78_2000001011 | Human | Colorectum | AD | 2.20e-05 | 1.60e-01 | -0.1088 |
| 55766 | H2AJ | HTA11_347_2000001011 | Human | Colorectum | AD | 7.85e-28 | 4.79e-01 | -0.1954 |
| 55766 | H2AJ | HTA11_411_2000001011 | Human | Colorectum | SER | 6.89e-14 | 9.77e-01 | -0.2602 |
| Page: 1 2 3 |
| Transcriptomic changes along malignancy continuum. |
| Tissue | Expression Dynamics | Abbreviation |
| Cervix |  | CC: Cervix cancer |
| HSIL_HPV: HPV-infected high-grade squamous intraepithelial lesions | ||
| N_HPV: HPV-infected normal cervix | ||
| Colorectum (GSE201348) |  | FAP: Familial adenomatous polyposis |
| CRC: Colorectal cancer | ||
| Colorectum (HTA11) |  | AD: Adenomas |
| SER: Sessile serrated lesions | ||
| MSI-H: Microsatellite-high colorectal cancer | ||
| MSS: Microsatellite stable colorectal cancer |
| ∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
Top |
Malignant transformation related pathway analysis |
| Find out the enriched GO biological processes and KEGG pathways involved in transition from healthy to precancer to cancer |
| Figure of enriched GO biological processes. |
| Tissue | Disease Stage | Enriched GO biological Processes |
| Colorectum | AD |  |
| Colorectum | SER |  |
| Colorectum | MSS |  |
| Colorectum | MSI-H |  |
| Colorectum | FAP |  |
| ∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
| Page: 1 2 3 4 5 6 7 8 9 |
| Enriched GO biological processes. |
| GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
| Page: 1 |
| Enriched KEGG pathways. |
| Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
| hsa05322 | Cervix | HSIL_HPV | Systemic lupus erythematosus | 19/459 | 137/8465 | 1.40e-04 | 1.74e-03 | 1.40e-03 | 19 |
| hsa053221 | Cervix | HSIL_HPV | Systemic lupus erythematosus | 19/459 | 137/8465 | 1.40e-04 | 1.74e-03 | 1.40e-03 | 19 |
| hsa04217 | Colorectum | SER | Necroptosis | 47/1580 | 159/8465 | 5.21e-04 | 4.44e-03 | 3.22e-03 | 47 |
| hsa042171 | Colorectum | SER | Necroptosis | 47/1580 | 159/8465 | 5.21e-04 | 4.44e-03 | 3.22e-03 | 47 |
| Page: 1 |
Top |
Cell-cell communication analysis |
| Identification of potential cell-cell interactions between two cell types and their ligand-receptor pairs for different disease states |
| Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
| Page: 1 |
Top |
Single-cell gene regulatory network inference analysis |
| Find out the significant the regulons (TFs) and the target genes of each regulon across cell types for different disease states |
| TF | Cell Type | Tissue | Disease Stage | Target Gene | RSS | Regulon Activity |
| ∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
| Page: 1 |
Top |
Somatic mutation of malignant transformation related genes |
| Annotation of somatic variants for genes involved in malignant transformation |
| Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
| Page: 1 |
Top |
Related drugs of malignant transformation related genes |
| Identification of chemicals and drugs interact with genes involved in malignant transfromation |
| (DGIdb 4.0) |
| Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
| Page: 1 |
Copyright 2023-Present -The University of Texas Health Science Center at Houston |