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Gene: GAN |
Gene summary for GAN |
 Gene summary. |
| Gene information | Species | Human | Gene symbol | GAN | Gene ID | 8139 |
| Gene name | gigaxonin | |
| Gene Alias | GAN1 | |
| Cytomap | 16q23.2 | |
| Gene Type | protein-coding | GO ID | GO:0006464 | UniProtAcc | A0A0S2Z4W2 |
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Malignant transformation analysis |
| Identification of the aberrant gene expression in precancerous and cancerous lesions by comparing the gene expression of stem-like cells in diseased tissues with normal stem cells |
| Malignant transformation involving gene list. |
| Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
| 8139 | GAN | CCI_1 | Human | Cervix | CC | 4.32e-13 | 7.07e-01 | 0.528 |
| 8139 | GAN | CCI_2 | Human | Cervix | CC | 3.18e-07 | 7.64e-01 | 0.5249 |
| 8139 | GAN | CCI_3 | Human | Cervix | CC | 2.75e-12 | 7.43e-01 | 0.516 |
| 8139 | GAN | Tumor | Human | Cervix | CC | 5.14e-07 | 2.04e-01 | 0.1241 |
| 8139 | GAN | LZE22T | Human | Esophagus | ESCC | 1.23e-02 | 1.30e-01 | 0.068 |
| 8139 | GAN | P2T-E | Human | Esophagus | ESCC | 8.79e-06 | -5.63e-02 | 0.1177 |
| 8139 | GAN | P4T-E | Human | Esophagus | ESCC | 2.50e-06 | -4.93e-02 | 0.1323 |
| 8139 | GAN | P5T-E | Human | Esophagus | ESCC | 2.60e-11 | -3.88e-02 | 0.1327 |
| 8139 | GAN | P8T-E | Human | Esophagus | ESCC | 2.19e-24 | 7.83e-02 | 0.0889 |
| 8139 | GAN | P9T-E | Human | Esophagus | ESCC | 4.51e-08 | 4.91e-02 | 0.1131 |
| 8139 | GAN | P10T-E | Human | Esophagus | ESCC | 1.45e-12 | 1.12e-01 | 0.116 |
| 8139 | GAN | P11T-E | Human | Esophagus | ESCC | 2.71e-02 | 1.97e-01 | 0.1426 |
| 8139 | GAN | P12T-E | Human | Esophagus | ESCC | 4.29e-15 | -1.83e-02 | 0.1122 |
| 8139 | GAN | P15T-E | Human | Esophagus | ESCC | 1.37e-07 | 1.32e-01 | 0.1149 |
| 8139 | GAN | P16T-E | Human | Esophagus | ESCC | 8.83e-07 | -8.29e-02 | 0.1153 |
| 8139 | GAN | P20T-E | Human | Esophagus | ESCC | 2.42e-10 | 1.12e-01 | 0.1124 |
| 8139 | GAN | P21T-E | Human | Esophagus | ESCC | 1.39e-05 | 3.31e-02 | 0.1617 |
| 8139 | GAN | P22T-E | Human | Esophagus | ESCC | 7.19e-12 | 8.98e-02 | 0.1236 |
| 8139 | GAN | P23T-E | Human | Esophagus | ESCC | 6.87e-11 | 6.04e-01 | 0.108 |
| 8139 | GAN | P24T-E | Human | Esophagus | ESCC | 1.28e-11 | -3.58e-02 | 0.1287 |
| Page: 1 2 3 4 |
| Transcriptomic changes along malignancy continuum. |
| Tissue | Expression Dynamics | Abbreviation |
| Cervix |  | CC: Cervix cancer |
| HSIL_HPV: HPV-infected high-grade squamous intraepithelial lesions | ||
| N_HPV: HPV-infected normal cervix | ||
| Esophagus |  | ESCC: Esophageal squamous cell carcinoma |
| HGIN: High-grade intraepithelial neoplasias | ||
| LGIN: Low-grade intraepithelial neoplasias | ||
| Oral Cavity |  | EOLP: Erosive Oral lichen planus |
| LP: leukoplakia | ||
| NEOLP: Non-erosive oral lichen planus | ||
| OSCC: Oral squamous cell carcinoma | ||
| Skin |  | AK: Actinic keratosis |
| cSCC: Cutaneous squamous cell carcinoma | ||
| SCCIS:squamous cell carcinoma in situ |
| ∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
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Malignant transformation related pathway analysis |
| Find out the enriched GO biological processes and KEGG pathways involved in transition from healthy to precancer to cancer |
| Figure of enriched GO biological processes. |
| Tissue | Disease Stage | Enriched GO biological Processes |
| Colorectum | AD |  |
| Colorectum | SER |  |
| Colorectum | MSS |  |
| Colorectum | MSI-H |  |
| Colorectum | FAP |  |
| ∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
| Page: 1 2 3 4 5 6 7 8 9 |
| Enriched GO biological processes. |
| GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
| GO:00091002 | Esophagus | ESCC | glycoprotein metabolic process | 226/8552 | 387/18723 | 2.64e-07 | 3.94e-06 | 226 |
| GO:00442626 | Esophagus | ESCC | cellular carbohydrate metabolic process | 160/8552 | 283/18723 | 1.43e-04 | 9.66e-04 | 160 |
| GO:0009100 | Liver | HCC | glycoprotein metabolic process | 193/7958 | 387/18723 | 1.89e-03 | 9.62e-03 | 193 |
| GO:00091001 | Oral cavity | OSCC | glycoprotein metabolic process | 185/7305 | 387/18723 | 2.37e-04 | 1.54e-03 | 185 |
| GO:00442625 | Oral cavity | OSCC | cellular carbohydrate metabolic process | 130/7305 | 283/18723 | 9.98e-03 | 3.49e-02 | 130 |
| GO:00091003 | Thyroid | PTC | glycoprotein metabolic process | 147/5968 | 387/18723 | 5.87e-03 | 2.64e-02 | 147 |
| GO:000910011 | Thyroid | ATC | glycoprotein metabolic process | 153/6293 | 387/18723 | 7.90e-03 | 3.06e-02 | 153 |
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| Enriched KEGG pathways. |
| Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
| Page: 1 |
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Cell-cell communication analysis |
| Identification of potential cell-cell interactions between two cell types and their ligand-receptor pairs for different disease states |
| Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
| Page: 1 |
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Single-cell gene regulatory network inference analysis |
| Find out the significant the regulons (TFs) and the target genes of each regulon across cell types for different disease states |
| TF | Cell Type | Tissue | Disease Stage | Target Gene | RSS | Regulon Activity |
| ∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
| Page: 1 |
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Somatic mutation of malignant transformation related genes |
| Annotation of somatic variants for genes involved in malignant transformation |
| Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
| GAN | SNV | Missense_Mutation | novel | c.922G>A | p.Glu308Lys | p.E308K | Q9H2C0 | protein_coding | tolerated(0.07) | benign(0.101) | TCGA-AN-A046-01 | Breast | breast invasive carcinoma | Female | >=65 | I/II | Unknown | Unknown | SD |
| GAN | SNV | Missense_Mutation | novel | c.634G>T | p.Val212Phe | p.V212F | Q9H2C0 | protein_coding | tolerated(0.08) | possibly_damaging(0.615) | TCGA-D8-A1JB-01 | Breast | breast invasive carcinoma | Female | <65 | I/II | Chemotherapy | adriamycin | SD |
| GAN | SNV | Missense_Mutation | rs773971284 | c.878N>A | p.Arg293Gln | p.R293Q | Q9H2C0 | protein_coding | deleterious(0.01) | benign(0.042) | TCGA-E9-A54X-01 | Breast | breast invasive carcinoma | Female | >=65 | I/II | Unknown | Unknown | SD |
| GAN | SNV | Missense_Mutation | rs119485088 | c.1456N>A | p.Glu486Lys | p.E486K | Q9H2C0 | protein_coding | tolerated(0.15) | benign(0.086) | TCGA-GM-A2DO-01 | Breast | breast invasive carcinoma | Female | <65 | I/II | Hormone Therapy | tamoxiphen | CR |
| GAN | deletion | Frame_Shift_Del | novel | c.836delG | p.Gly279ValfsTer34 | p.G279Vfs*34 | Q9H2C0 | protein_coding | TCGA-EW-A2FV-01 | Breast | breast invasive carcinoma | Female | <65 | III/IV | Chemotherapy | docetaxel | SD | ||
| GAN | deletion | Frame_Shift_Del | novel | c.916delT | p.Trp306GlyfsTer7 | p.W306Gfs*7 | Q9H2C0 | protein_coding | TCGA-EW-A2FV-01 | Breast | breast invasive carcinoma | Female | <65 | III/IV | Chemotherapy | docetaxel | SD | ||
| GAN | SNV | Missense_Mutation | novel | c.1509N>G | p.Ile503Met | p.I503M | Q9H2C0 | protein_coding | tolerated(0.48) | benign(0.006) | TCGA-C5-A1MH-01 | Cervix | cervical & endocervical cancer | Female | >=65 | III/IV | Chemotherapy | cisplatin | PD |
| GAN | SNV | Missense_Mutation | c.109N>C | p.Asp37His | p.D37H | Q9H2C0 | protein_coding | tolerated(0.06) | benign(0.161) | TCGA-JW-A5VL-01 | Cervix | cervical & endocervical cancer | Female | <65 | I/II | Unknown | Unknown | SD | |
| GAN | SNV | Missense_Mutation | c.143N>C | p.Leu48Pro | p.L48P | Q9H2C0 | protein_coding | deleterious(0) | probably_damaging(0.997) | TCGA-A6-5661-01 | Colorectum | colon adenocarcinoma | Female | >=65 | I/II | Unknown | Unknown | SD | |
| GAN | SNV | Missense_Mutation | rs574374537 | c.782N>T | p.Ala261Val | p.A261V | Q9H2C0 | protein_coding | tolerated(0.25) | benign(0.365) | TCGA-A6-5665-01 | Colorectum | colon adenocarcinoma | Female | >=65 | I/II | Unknown | Unknown | PD |
| Page: 1 2 3 4 5 6 7 8 |
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Related drugs of malignant transformation related genes |
| Identification of chemicals and drugs interact with genes involved in malignant transfromation |
| (DGIdb 4.0) |
| Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
| Page: 1 |
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