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Gene: GABPB1-AS1 |
Gene summary for GABPB1-AS1 |
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Gene information | Species | Human | Gene symbol | GABPB1-AS1 | Gene ID | 100129387 |
Gene name | GABPB1 antisense RNA 1 | |
Gene Alias | GABPB1-AS1 | |
Cytomap | 15q21.2 | |
Gene Type | ncRNA | GO ID | NA | UniProtAcc | NA |
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Malignant transformation analysis |
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Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
100129387 | GABPB1-AS1 | CCI_1 | Human | Cervix | CC | 6.02e-05 | 1.02e+00 | 0.528 |
100129387 | GABPB1-AS1 | CCI_2 | Human | Cervix | CC | 1.22e-08 | 5.17e-01 | 0.5249 |
100129387 | GABPB1-AS1 | CCI_3 | Human | Cervix | CC | 4.60e-08 | 3.75e-01 | 0.516 |
100129387 | GABPB1-AS1 | Tumor | Human | Cervix | CC | 9.00e-07 | 1.50e-01 | 0.1241 |
100129387 | GABPB1-AS1 | sample1 | Human | Cervix | CC | 2.71e-03 | 2.05e-01 | 0.0959 |
100129387 | GABPB1-AS1 | sample3 | Human | Cervix | CC | 3.63e-03 | 1.03e-01 | 0.1387 |
100129387 | GABPB1-AS1 | H2 | Human | Cervix | HSIL_HPV | 4.00e-05 | 1.42e-01 | 0.0632 |
100129387 | GABPB1-AS1 | T1 | Human | Cervix | CC | 1.39e-10 | 2.98e-01 | 0.0918 |
100129387 | GABPB1-AS1 | T2 | Human | Cervix | CC | 6.01e-03 | 2.39e-01 | 0.0709 |
100129387 | GABPB1-AS1 | T3 | Human | Cervix | CC | 7.65e-03 | 1.08e-01 | 0.1389 |
100129387 | GABPB1-AS1 | HTA11_4255_2000001011 | Human | Colorectum | SER | 2.01e-03 | 7.48e-01 | 0.0446 |
100129387 | GABPB1-AS1 | HTA11_10711_2000001011 | Human | Colorectum | AD | 5.01e-04 | 5.89e-01 | 0.0338 |
100129387 | GABPB1-AS1 | HTA11_7696_3000711011 | Human | Colorectum | AD | 9.51e-09 | 5.65e-01 | 0.0674 |
100129387 | GABPB1-AS1 | HTA11_99999970781_79442 | Human | Colorectum | MSS | 6.20e-27 | 1.05e+00 | 0.294 |
100129387 | GABPB1-AS1 | HTA11_99999965062_69753 | Human | Colorectum | MSI-H | 3.88e-02 | 8.95e-01 | 0.3487 |
100129387 | GABPB1-AS1 | HTA11_99999965104_69814 | Human | Colorectum | MSS | 5.96e-08 | 8.56e-01 | 0.281 |
100129387 | GABPB1-AS1 | HTA11_99999974143_84620 | Human | Colorectum | MSS | 6.74e-05 | 5.10e-01 | 0.3005 |
100129387 | GABPB1-AS1 | A015-C-203 | Human | Colorectum | FAP | 3.61e-18 | -2.38e-01 | -0.1294 |
100129387 | GABPB1-AS1 | A015-C-204 | Human | Colorectum | FAP | 1.32e-03 | -2.59e-01 | -0.0228 |
100129387 | GABPB1-AS1 | A014-C-040 | Human | Colorectum | FAP | 9.82e-03 | -2.59e-01 | -0.1184 |
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∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
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Malignant transformation related pathway analysis |
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Tissue | Disease Stage | Enriched GO biological Processes |
Colorectum | AD | ![]() |
Colorectum | SER | ![]() |
Colorectum | MSS | ![]() |
Colorectum | MSI-H | ![]() |
Colorectum | FAP | ![]() |
∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
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GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
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Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
Page: 1 |
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Cell-cell communication analysis |
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Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
Page: 1 |
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Single-cell gene regulatory network inference analysis |
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TF | Cell Type | Tissue | Disease Stage | Target Gene | RSS | Regulon Activity |
∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
Page: 1 |
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Somatic mutation of malignant transformation related genes |
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Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
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Related drugs of malignant transformation related genes |
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(DGIdb 4.0) |
Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
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