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Gene: FAR1 |
Gene summary for FAR1 |
 Gene summary. |
| Gene information | Species | Human | Gene symbol | FAR1 | Gene ID | 84188 |
| Gene name | fatty acyl-CoA reductase 1 | |
| Gene Alias | CSPSD | |
| Cytomap | 11p15.3 | |
| Gene Type | protein-coding | GO ID | GO:0006139 | UniProtAcc | Q8WVX9 |
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Malignant transformation analysis |
| Identification of the aberrant gene expression in precancerous and cancerous lesions by comparing the gene expression of stem-like cells in diseased tissues with normal stem cells |
| Malignant transformation involving gene list. |
| Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
| 84188 | FAR1 | HTA11_3410_2000001011 | Human | Colorectum | AD | 2.49e-35 | -8.14e-01 | 0.0155 |
| 84188 | FAR1 | HTA11_2487_2000001011 | Human | Colorectum | SER | 1.83e-14 | -7.21e-01 | -0.1808 |
| 84188 | FAR1 | HTA11_2951_2000001011 | Human | Colorectum | AD | 2.55e-05 | -9.06e-01 | 0.0216 |
| 84188 | FAR1 | HTA11_1938_2000001011 | Human | Colorectum | AD | 1.29e-02 | -4.56e-01 | -0.0811 |
| 84188 | FAR1 | HTA11_3361_2000001011 | Human | Colorectum | AD | 5.98e-10 | -7.38e-01 | -0.1207 |
| 84188 | FAR1 | HTA11_696_2000001011 | Human | Colorectum | AD | 1.70e-28 | -6.48e-01 | -0.1464 |
| 84188 | FAR1 | HTA11_866_2000001011 | Human | Colorectum | AD | 1.06e-16 | -5.81e-01 | -0.1001 |
| 84188 | FAR1 | HTA11_1391_2000001011 | Human | Colorectum | AD | 3.39e-05 | -4.69e-01 | -0.059 |
| 84188 | FAR1 | HTA11_2992_2000001011 | Human | Colorectum | SER | 3.17e-02 | -5.93e-01 | -0.1706 |
| 84188 | FAR1 | HTA11_5212_2000001011 | Human | Colorectum | AD | 4.18e-04 | -6.54e-01 | -0.2061 |
| 84188 | FAR1 | HTA11_5216_2000001011 | Human | Colorectum | SER | 2.12e-04 | -7.01e-01 | -0.1462 |
| 84188 | FAR1 | HTA11_9341_2000001011 | Human | Colorectum | SER | 1.32e-03 | -9.04e-01 | -0.00410000000000005 |
| 84188 | FAR1 | HTA11_7862_2000001011 | Human | Colorectum | AD | 6.34e-05 | -5.39e-01 | -0.0179 |
| 84188 | FAR1 | HTA11_866_3004761011 | Human | Colorectum | AD | 3.02e-33 | -8.83e-01 | 0.096 |
| 84188 | FAR1 | HTA11_4255_2000001011 | Human | Colorectum | SER | 3.00e-03 | -6.74e-01 | 0.0446 |
| 84188 | FAR1 | HTA11_8622_2000001021 | Human | Colorectum | SER | 2.69e-10 | -9.42e-01 | 0.0528 |
| 84188 | FAR1 | HTA11_10711_2000001011 | Human | Colorectum | AD | 2.75e-17 | -7.35e-01 | 0.0338 |
| 84188 | FAR1 | HTA11_7696_3000711011 | Human | Colorectum | AD | 1.77e-37 | -7.41e-01 | 0.0674 |
| 84188 | FAR1 | HTA11_6818_2000001011 | Human | Colorectum | AD | 2.69e-08 | -7.99e-01 | 0.0112 |
| 84188 | FAR1 | HTA11_11156_2000001011 | Human | Colorectum | AD | 4.76e-04 | -9.88e-01 | 0.0397 |
| Page: 1 2 3 4 5 6 7 8 9 |
| Transcriptomic changes along malignancy continuum. |
| Tissue | Expression Dynamics | Abbreviation |
| Colorectum (GSE201348) |  | FAP: Familial adenomatous polyposis |
| CRC: Colorectal cancer | ||
| Colorectum (HTA11) |  | AD: Adenomas |
| SER: Sessile serrated lesions | ||
| MSI-H: Microsatellite-high colorectal cancer | ||
| MSS: Microsatellite stable colorectal cancer | ||
| Esophagus |  | ESCC: Esophageal squamous cell carcinoma |
| HGIN: High-grade intraepithelial neoplasias | ||
| LGIN: Low-grade intraepithelial neoplasias | ||
| Oral Cavity |  | EOLP: Erosive Oral lichen planus |
| LP: leukoplakia | ||
| NEOLP: Non-erosive oral lichen planus | ||
| OSCC: Oral squamous cell carcinoma | ||
| Prostate |  | BPH: Benign Prostatic Hyperplasia |
| Skin |  | AK: Actinic keratosis |
| cSCC: Cutaneous squamous cell carcinoma | ||
| SCCIS:squamous cell carcinoma in situ | ||
| Thyroid |  | ATC: Anaplastic thyroid cancer |
| HT: Hashimoto's thyroiditis | ||
| PTC: Papillary thyroid cancer |
| ∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
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Malignant transformation related pathway analysis |
| Find out the enriched GO biological processes and KEGG pathways involved in transition from healthy to precancer to cancer |
| Figure of enriched GO biological processes. |
| Tissue | Disease Stage | Enriched GO biological Processes |
| Colorectum | AD |  |
| Colorectum | SER |  |
| Colorectum | MSS |  |
| Colorectum | MSI-H |  |
| Colorectum | FAP |  |
| ∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
| Page: 1 2 3 4 5 6 7 8 9 |
| Enriched GO biological processes. |
| GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
| GO:0009150 | Colorectum | AD | purine ribonucleotide metabolic process | 142/3918 | 368/18723 | 4.29e-15 | 1.17e-12 | 142 |
| GO:0006163 | Colorectum | AD | purine nucleotide metabolic process | 149/3918 | 396/18723 | 1.08e-14 | 2.80e-12 | 149 |
| GO:0072521 | Colorectum | AD | purine-containing compound metabolic process | 153/3918 | 416/18723 | 4.34e-14 | 1.01e-11 | 153 |
| GO:0009259 | Colorectum | AD | ribonucleotide metabolic process | 144/3918 | 385/18723 | 5.25e-14 | 1.13e-11 | 144 |
| GO:0019693 | Colorectum | AD | ribose phosphate metabolic process | 145/3918 | 396/18723 | 3.01e-13 | 5.71e-11 | 145 |
| GO:0009117 | Colorectum | AD | nucleotide metabolic process | 168/3918 | 489/18723 | 2.20e-12 | 3.36e-10 | 168 |
| GO:0006753 | Colorectum | AD | nucleoside phosphate metabolic process | 169/3918 | 497/18723 | 4.99e-12 | 6.98e-10 | 169 |
| GO:0006790 | Colorectum | AD | sulfur compound metabolic process | 101/3918 | 339/18723 | 6.46e-05 | 1.07e-03 | 101 |
| GO:0018904 | Colorectum | AD | ether metabolic process | 14/3918 | 27/18723 | 3.72e-04 | 4.29e-03 | 14 |
| GO:0006662 | Colorectum | AD | glycerol ether metabolic process | 12/3918 | 22/18723 | 5.38e-04 | 5.74e-03 | 12 |
| GO:0033865 | Colorectum | AD | nucleoside bisphosphate metabolic process | 42/3918 | 128/18723 | 1.12e-03 | 1.02e-02 | 42 |
| GO:0033875 | Colorectum | AD | ribonucleoside bisphosphate metabolic process | 42/3918 | 128/18723 | 1.12e-03 | 1.02e-02 | 42 |
| GO:0034032 | Colorectum | AD | purine nucleoside bisphosphate metabolic process | 42/3918 | 128/18723 | 1.12e-03 | 1.02e-02 | 42 |
| GO:0046485 | Colorectum | AD | ether lipid metabolic process | 10/3918 | 20/18723 | 3.67e-03 | 2.60e-02 | 10 |
| GO:0006650 | Colorectum | AD | glycerophospholipid metabolic process | 83/3918 | 306/18723 | 5.40e-03 | 3.55e-02 | 83 |
| GO:0006644 | Colorectum | AD | phospholipid metabolic process | 101/3918 | 383/18723 | 5.80e-03 | 3.67e-02 | 101 |
| GO:0045017 | Colorectum | AD | glycerolipid biosynthetic process | 69/3918 | 252/18723 | 8.33e-03 | 4.88e-02 | 69 |
| GO:00061631 | Colorectum | SER | purine nucleotide metabolic process | 109/2897 | 396/18723 | 4.26e-10 | 5.44e-08 | 109 |
| GO:00091501 | Colorectum | SER | purine ribonucleotide metabolic process | 103/2897 | 368/18723 | 4.69e-10 | 5.68e-08 | 103 |
| GO:00725211 | Colorectum | SER | purine-containing compound metabolic process | 113/2897 | 416/18723 | 4.80e-10 | 5.68e-08 | 113 |
| Page: 1 2 3 4 5 6 7 8 |
| Enriched KEGG pathways. |
| Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
| hsa041467 | Esophagus | ESCC | Peroxisome | 55/4205 | 82/8465 | 1.04e-03 | 3.27e-03 | 1.68e-03 | 55 |
| hsa0414612 | Esophagus | ESCC | Peroxisome | 55/4205 | 82/8465 | 1.04e-03 | 3.27e-03 | 1.68e-03 | 55 |
| hsa041466 | Oral cavity | OSCC | Peroxisome | 47/3704 | 82/8465 | 9.01e-03 | 2.01e-02 | 1.03e-02 | 47 |
| hsa0414611 | Oral cavity | OSCC | Peroxisome | 47/3704 | 82/8465 | 9.01e-03 | 2.01e-02 | 1.03e-02 | 47 |
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Cell-cell communication analysis |
| Identification of potential cell-cell interactions between two cell types and their ligand-receptor pairs for different disease states |
| Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
| Page: 1 |
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Single-cell gene regulatory network inference analysis |
| Find out the significant the regulons (TFs) and the target genes of each regulon across cell types for different disease states |
| TF | Cell Type | Tissue | Disease Stage | Target Gene | RSS | Regulon Activity |
| ∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
| Page: 1 |
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Somatic mutation of malignant transformation related genes |
| Annotation of somatic variants for genes involved in malignant transformation |
| Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
| FAR1 | SNV | Missense_Mutation | novel | c.1048N>G | p.His350Asp | p.H350D | Q8WVX9 | protein_coding | tolerated(0.62) | benign(0.001) | TCGA-D8-A4Z1-01 | Breast | breast invasive carcinoma | Female | >=65 | I/II | Hormone Therapy | tamoxiphen | SD |
| FAR1 | SNV | Missense_Mutation | c.588N>C | p.Leu196Phe | p.L196F | Q8WVX9 | protein_coding | deleterious(0) | probably_damaging(0.995) | TCGA-LL-A73Z-01 | Breast | breast invasive carcinoma | Female | <65 | III/IV | Chemotherapy | adriamycin | PD | |
| FAR1 | insertion | Frame_Shift_Ins | novel | c.1348_1349insAAAGCCTGTACCATTT | p.Met450LysfsTer27 | p.M450Kfs*27 | Q8WVX9 | protein_coding | TCGA-AR-A0TU-01 | Breast | breast invasive carcinoma | Female | <65 | I/II | Unspecific | Doxorubicin | SD | ||
| FAR1 | insertion | In_Frame_Ins | novel | c.1348_1349insAAAGCCTGTACCATT | p.Met450delinsLysSerLeuTyrHisLeu | p.M450delinsKSLYHL | Q8WVX9 | protein_coding | TCGA-AR-A0U2-01 | Breast | breast invasive carcinoma | Female | <65 | III/IV | Hormone Therapy | tamoxiphen | PD | ||
| FAR1 | SNV | Missense_Mutation | novel | c.899N>G | p.Ile300Ser | p.I300S | Q8WVX9 | protein_coding | tolerated(0.07) | benign(0.033) | TCGA-FU-A3HZ-01 | Cervix | cervical & endocervical cancer | Female | <65 | I/II | Chemotherapy | cisplatin | CR |
| FAR1 | SNV | Missense_Mutation | rs753671320 | c.860N>T | p.Ala287Val | p.A287V | Q8WVX9 | protein_coding | tolerated(0.18) | benign(0.211) | TCGA-A6-5665-01 | Colorectum | colon adenocarcinoma | Female | >=65 | I/II | Unknown | Unknown | PD |
| FAR1 | SNV | Missense_Mutation | novel | c.444N>A | p.Phe148Leu | p.F148L | Q8WVX9 | protein_coding | tolerated(0.72) | benign(0.074) | TCGA-CA-6717-01 | Colorectum | colon adenocarcinoma | Male | <65 | I/II | Chemotherapy | oxaliplatin | CR |
| FAR1 | SNV | Missense_Mutation | c.1081G>A | p.Ala361Thr | p.A361T | Q8WVX9 | protein_coding | deleterious(0.01) | probably_damaging(0.998) | TCGA-CA-6718-01 | Colorectum | colon adenocarcinoma | Male | <65 | I/II | Unknown | Unknown | PD | |
| FAR1 | SNV | Missense_Mutation | c.242N>T | p.Ala81Val | p.A81V | Q8WVX9 | protein_coding | tolerated(0.18) | benign(0.053) | TCGA-F4-6856-01 | Colorectum | colon adenocarcinoma | Male | <65 | I/II | Ancillary | leucovorin | CR | |
| FAR1 | SNV | Missense_Mutation | c.416N>T | p.Ala139Val | p.A139V | Q8WVX9 | protein_coding | tolerated(0.12) | probably_damaging(0.983) | TCGA-G4-6302-01 | Colorectum | colon adenocarcinoma | Female | >=65 | I/II | Unknown | Unknown | SD |
| Page: 1 2 3 4 5 6 |
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Related drugs of malignant transformation related genes |
| Identification of chemicals and drugs interact with genes involved in malignant transfromation |
| (DGIdb 4.0) |
| Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
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