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Gene: FAM21A |
Gene summary for FAM21A |
 Gene summary. |
| Gene information | Species | Human | Gene symbol | FAM21A | Gene ID | 387680 |
| Gene name | WASH complex subunit 2A | |
| Gene Alias | FAM21A | |
| Cytomap | 10q11.23 | |
| Gene Type | protein-coding | GO ID | GO:0006810 | UniProtAcc | Q641Q2 |
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Malignant transformation analysis |
| Identification of the aberrant gene expression in precancerous and cancerous lesions by comparing the gene expression of stem-like cells in diseased tissues with normal stem cells |
| Malignant transformation involving gene list. |
| Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
| 387680 | FAM21A | HTA11_99999970781_79442 | Human | Colorectum | MSS | 4.02e-18 | 3.72e-01 | 0.294 |
| 387680 | FAM21A | HTA11_99999965062_69753 | Human | Colorectum | MSI-H | 5.36e-07 | 7.22e-01 | 0.3487 |
| 387680 | FAM21A | HTA11_99999965104_69814 | Human | Colorectum | MSS | 3.98e-30 | 7.19e-01 | 0.281 |
| 387680 | FAM21A | HTA11_99999971662_82457 | Human | Colorectum | MSS | 1.42e-14 | 3.79e-01 | 0.3859 |
| 387680 | FAM21A | HTA11_99999974143_84620 | Human | Colorectum | MSS | 2.00e-05 | 1.38e-01 | 0.3005 |
| 387680 | FAM21A | P1T-E | Human | Esophagus | ESCC | 1.45e-08 | 3.99e-01 | 0.0875 |
| 387680 | FAM21A | P2T-E | Human | Esophagus | ESCC | 3.82e-22 | 3.83e-01 | 0.1177 |
| 387680 | FAM21A | P4T-E | Human | Esophagus | ESCC | 5.97e-12 | 3.66e-01 | 0.1323 |
| 387680 | FAM21A | P5T-E | Human | Esophagus | ESCC | 2.43e-11 | 1.61e-01 | 0.1327 |
| 387680 | FAM21A | P8T-E | Human | Esophagus | ESCC | 2.00e-15 | 3.24e-01 | 0.0889 |
| 387680 | FAM21A | P9T-E | Human | Esophagus | ESCC | 2.64e-03 | 1.40e-01 | 0.1131 |
| 387680 | FAM21A | P10T-E | Human | Esophagus | ESCC | 3.80e-10 | 1.55e-01 | 0.116 |
| 387680 | FAM21A | P11T-E | Human | Esophagus | ESCC | 6.56e-09 | 4.78e-01 | 0.1426 |
| 387680 | FAM21A | P12T-E | Human | Esophagus | ESCC | 5.13e-17 | 3.71e-01 | 0.1122 |
| 387680 | FAM21A | P15T-E | Human | Esophagus | ESCC | 1.16e-08 | 3.08e-01 | 0.1149 |
| 387680 | FAM21A | P16T-E | Human | Esophagus | ESCC | 6.53e-17 | 3.47e-01 | 0.1153 |
| 387680 | FAM21A | P19T-E | Human | Esophagus | ESCC | 2.37e-03 | 3.86e-01 | 0.1662 |
| 387680 | FAM21A | P20T-E | Human | Esophagus | ESCC | 1.10e-14 | 3.26e-01 | 0.1124 |
| 387680 | FAM21A | P21T-E | Human | Esophagus | ESCC | 4.25e-21 | 4.74e-01 | 0.1617 |
| 387680 | FAM21A | P22T-E | Human | Esophagus | ESCC | 4.67e-13 | 2.94e-01 | 0.1236 |
| Page: 1 2 3 4 |
| Transcriptomic changes along malignancy continuum. |
| Tissue | Expression Dynamics | Abbreviation |
| Colorectum (GSE201348) |  | FAP: Familial adenomatous polyposis |
| CRC: Colorectal cancer | ||
| Colorectum (HTA11) |  | AD: Adenomas |
| SER: Sessile serrated lesions | ||
| MSI-H: Microsatellite-high colorectal cancer | ||
| MSS: Microsatellite stable colorectal cancer | ||
| Esophagus |  | ESCC: Esophageal squamous cell carcinoma |
| HGIN: High-grade intraepithelial neoplasias | ||
| LGIN: Low-grade intraepithelial neoplasias | ||
| Oral Cavity |  | EOLP: Erosive Oral lichen planus |
| LP: leukoplakia | ||
| NEOLP: Non-erosive oral lichen planus | ||
| OSCC: Oral squamous cell carcinoma |
| ∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
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Malignant transformation related pathway analysis |
| Find out the enriched GO biological processes and KEGG pathways involved in transition from healthy to precancer to cancer |
| Figure of enriched GO biological processes. |
| Tissue | Disease Stage | Enriched GO biological Processes |
| Colorectum | AD |  |
| Colorectum | SER |  |
| Colorectum | MSS |  |
| Colorectum | MSI-H |  |
| Colorectum | FAP |  |
| ∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
| Page: 1 2 3 4 5 6 7 8 9 |
| Enriched GO biological processes. |
| GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
| Page: 1 |
| Enriched KEGG pathways. |
| Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
| hsa04144 | Colorectum | AD | Endocytosis | 111/2092 | 251/8465 | 5.95e-12 | 1.42e-10 | 9.08e-11 | 111 |
| hsa041441 | Colorectum | AD | Endocytosis | 111/2092 | 251/8465 | 5.95e-12 | 1.42e-10 | 9.08e-11 | 111 |
| hsa041442 | Colorectum | SER | Endocytosis | 81/1580 | 251/8465 | 1.14e-07 | 2.36e-06 | 1.71e-06 | 81 |
| hsa041443 | Colorectum | SER | Endocytosis | 81/1580 | 251/8465 | 1.14e-07 | 2.36e-06 | 1.71e-06 | 81 |
| hsa041444 | Colorectum | MSS | Endocytosis | 102/1875 | 251/8465 | 1.85e-11 | 4.43e-10 | 2.71e-10 | 102 |
| hsa041445 | Colorectum | MSS | Endocytosis | 102/1875 | 251/8465 | 1.85e-11 | 4.43e-10 | 2.71e-10 | 102 |
| hsa0414422 | Liver | HCC | Endocytosis | 178/4020 | 251/8465 | 2.03e-14 | 5.22e-13 | 2.91e-13 | 178 |
| hsa0414432 | Liver | HCC | Endocytosis | 178/4020 | 251/8465 | 2.03e-14 | 5.22e-13 | 2.91e-13 | 178 |
| Page: 1 |
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Cell-cell communication analysis |
| Identification of potential cell-cell interactions between two cell types and their ligand-receptor pairs for different disease states |
| Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
| Page: 1 |
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Single-cell gene regulatory network inference analysis |
| Find out the significant the regulons (TFs) and the target genes of each regulon across cell types for different disease states |
| TF | Cell Type | Tissue | Disease Stage | Target Gene | RSS | Regulon Activity |
| ∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
| Page: 1 |
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Somatic mutation of malignant transformation related genes |
| Annotation of somatic variants for genes involved in malignant transformation |
| Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
| Page: 1 |
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Related drugs of malignant transformation related genes |
| Identification of chemicals and drugs interact with genes involved in malignant transfromation |
| (DGIdb 4.0) |
| Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
| Page: 1 |
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