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Gene: EXOSC1 |
Gene summary for EXOSC1 |
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Gene information | Species | Human | Gene symbol | EXOSC1 | Gene ID | 51013 |
Gene name | exosome component 1 | |
Gene Alias | CGI-108 | |
Cytomap | 10q24.1 | |
Gene Type | protein-coding | GO ID | GO:0006139 | UniProtAcc | B1AMU3 |
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Malignant transformation analysis |
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Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
51013 | EXOSC1 | LZE4T | Human | Esophagus | ESCC | 1.12e-13 | 2.48e-01 | 0.0811 |
51013 | EXOSC1 | LZE5T | Human | Esophagus | ESCC | 1.42e-04 | 2.83e-01 | 0.0514 |
51013 | EXOSC1 | LZE20T | Human | Esophagus | ESCC | 6.29e-07 | 1.55e-01 | 0.0662 |
51013 | EXOSC1 | LZE24T | Human | Esophagus | ESCC | 1.20e-23 | 7.23e-01 | 0.0596 |
51013 | EXOSC1 | LZE21T | Human | Esophagus | ESCC | 3.96e-04 | 2.60e-01 | 0.0655 |
51013 | EXOSC1 | LZE6T | Human | Esophagus | ESCC | 7.06e-05 | 1.90e-01 | 0.0845 |
51013 | EXOSC1 | P2T-E | Human | Esophagus | ESCC | 2.08e-35 | 5.82e-01 | 0.1177 |
51013 | EXOSC1 | P4T-E | Human | Esophagus | ESCC | 4.12e-34 | 9.35e-01 | 0.1323 |
51013 | EXOSC1 | P5T-E | Human | Esophagus | ESCC | 2.72e-38 | 7.29e-01 | 0.1327 |
51013 | EXOSC1 | P8T-E | Human | Esophagus | ESCC | 2.73e-28 | 4.59e-01 | 0.0889 |
51013 | EXOSC1 | P9T-E | Human | Esophagus | ESCC | 1.19e-18 | 3.46e-01 | 0.1131 |
51013 | EXOSC1 | P10T-E | Human | Esophagus | ESCC | 1.91e-14 | 1.78e-01 | 0.116 |
51013 | EXOSC1 | P11T-E | Human | Esophagus | ESCC | 4.26e-18 | 5.24e-01 | 0.1426 |
51013 | EXOSC1 | P12T-E | Human | Esophagus | ESCC | 1.67e-28 | 5.28e-01 | 0.1122 |
51013 | EXOSC1 | P15T-E | Human | Esophagus | ESCC | 2.21e-20 | 5.96e-01 | 0.1149 |
51013 | EXOSC1 | P16T-E | Human | Esophagus | ESCC | 2.51e-26 | 3.72e-01 | 0.1153 |
51013 | EXOSC1 | P17T-E | Human | Esophagus | ESCC | 1.68e-08 | 4.42e-01 | 0.1278 |
51013 | EXOSC1 | P19T-E | Human | Esophagus | ESCC | 1.74e-08 | 4.66e-01 | 0.1662 |
51013 | EXOSC1 | P20T-E | Human | Esophagus | ESCC | 2.34e-23 | 5.43e-01 | 0.1124 |
51013 | EXOSC1 | P21T-E | Human | Esophagus | ESCC | 5.54e-30 | 5.50e-01 | 0.1617 |
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∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
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Malignant transformation related pathway analysis |
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Tissue | Disease Stage | Enriched GO biological Processes |
Colorectum | AD | ![]() |
Colorectum | SER | ![]() |
Colorectum | MSS | ![]() |
Colorectum | MSI-H | ![]() |
Colorectum | FAP | ![]() |
∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
Page: 1 2 3 4 5 6 7 8 9 |
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GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
GO:0022613111 | Esophagus | ESCC | ribonucleoprotein complex biogenesis | 365/8552 | 463/18723 | 1.74e-49 | 1.11e-45 | 365 |
GO:0042254111 | Esophagus | ESCC | ribosome biogenesis | 252/8552 | 299/18723 | 3.27e-44 | 1.04e-40 | 252 |
GO:003447015 | Esophagus | ESCC | ncRNA processing | 300/8552 | 395/18723 | 3.09e-35 | 3.26e-32 | 300 |
GO:0016072110 | Esophagus | ESCC | rRNA metabolic process | 197/8552 | 236/18723 | 1.31e-33 | 1.18e-30 | 197 |
GO:0006364110 | Esophagus | ESCC | rRNA processing | 189/8552 | 225/18723 | 4.88e-33 | 3.87e-30 | 189 |
GO:003466012 | Esophagus | ESCC | ncRNA metabolic process | 346/8552 | 485/18723 | 4.35e-31 | 2.51e-28 | 346 |
GO:0006403110 | Esophagus | ESCC | RNA localization | 166/8552 | 201/18723 | 1.95e-27 | 6.18e-25 | 166 |
GO:0006401110 | Esophagus | ESCC | RNA catabolic process | 204/8552 | 278/18723 | 3.39e-21 | 5.66e-19 | 204 |
GO:003304416 | Esophagus | ESCC | regulation of chromosome organization | 145/8552 | 187/18723 | 3.80e-19 | 4.31e-17 | 145 |
GO:0034655110 | Esophagus | ESCC | nucleobase-containing compound catabolic process | 272/8552 | 407/18723 | 2.92e-18 | 2.90e-16 | 272 |
GO:0006402110 | Esophagus | ESCC | mRNA catabolic process | 170/8552 | 232/18723 | 8.70e-18 | 8.00e-16 | 170 |
GO:004670018 | Esophagus | ESCC | heterocycle catabolic process | 286/8552 | 445/18723 | 1.12e-15 | 7.47e-14 | 286 |
GO:004427019 | Esophagus | ESCC | cellular nitrogen compound catabolic process | 288/8552 | 451/18723 | 3.03e-15 | 1.79e-13 | 288 |
GO:001943918 | Esophagus | ESCC | aromatic compound catabolic process | 295/8552 | 467/18723 | 1.09e-14 | 5.98e-13 | 295 |
GO:190136118 | Esophagus | ESCC | organic cyclic compound catabolic process | 307/8552 | 495/18723 | 9.99e-14 | 4.80e-12 | 307 |
GO:005105215 | Esophagus | ESCC | regulation of DNA metabolic process | 232/8552 | 359/18723 | 2.40e-13 | 1.13e-11 | 232 |
GO:000095618 | Esophagus | ESCC | nuclear-transcribed mRNA catabolic process | 88/8552 | 112/18723 | 9.41e-13 | 4.14e-11 | 88 |
GO:000072319 | Esophagus | ESCC | telomere maintenance | 99/8552 | 131/18723 | 2.68e-12 | 1.08e-10 | 99 |
GO:007189716 | Esophagus | ESCC | DNA biosynthetic process | 127/8552 | 180/18723 | 1.04e-11 | 3.85e-10 | 127 |
GO:00905013 | Esophagus | ESCC | RNA phosphodiester bond hydrolysis | 110/8552 | 152/18723 | 1.95e-11 | 6.81e-10 | 110 |
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Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
hsa0301824 | Esophagus | ESCC | RNA degradation | 62/4205 | 79/8465 | 1.18e-07 | 9.39e-07 | 4.81e-07 | 62 |
hsa0301834 | Esophagus | ESCC | RNA degradation | 62/4205 | 79/8465 | 1.18e-07 | 9.39e-07 | 4.81e-07 | 62 |
hsa03018 | Liver | Cirrhotic | RNA degradation | 44/2530 | 79/8465 | 1.43e-06 | 1.65e-05 | 1.02e-05 | 44 |
hsa030181 | Liver | Cirrhotic | RNA degradation | 44/2530 | 79/8465 | 1.43e-06 | 1.65e-05 | 1.02e-05 | 44 |
hsa030182 | Liver | HCC | RNA degradation | 58/4020 | 79/8465 | 2.29e-06 | 2.19e-05 | 1.22e-05 | 58 |
hsa030183 | Liver | HCC | RNA degradation | 58/4020 | 79/8465 | 2.29e-06 | 2.19e-05 | 1.22e-05 | 58 |
hsa030189 | Oral cavity | OSCC | RNA degradation | 59/3704 | 79/8465 | 2.05e-08 | 1.91e-07 | 9.70e-08 | 59 |
hsa0301814 | Oral cavity | OSCC | RNA degradation | 59/3704 | 79/8465 | 2.05e-08 | 1.91e-07 | 9.70e-08 | 59 |
hsa0301823 | Oral cavity | LP | RNA degradation | 39/2418 | 79/8465 | 6.98e-05 | 4.38e-04 | 2.83e-04 | 39 |
hsa0301833 | Oral cavity | LP | RNA degradation | 39/2418 | 79/8465 | 6.98e-05 | 4.38e-04 | 2.83e-04 | 39 |
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Cell-cell communication analysis |
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Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
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Single-cell gene regulatory network inference analysis |
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TF | Cell Type | Tissue | Disease Stage | Target Gene | RSS | Regulon Activity |
∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
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Somatic mutation of malignant transformation related genes |
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Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
EXOSC1 | deletion | Frame_Shift_Del | novel | c.540delA | p.Glu181AsnfsTer5 | p.E181Nfs*5 | Q9Y3B2 | protein_coding | TCGA-EW-A2FV-01 | Breast | breast invasive carcinoma | Female | <65 | III/IV | Chemotherapy | docetaxel | SD | ||
EXOSC1 | SNV | Missense_Mutation | rs762016854 | c.170N>C | p.Arg57Thr | p.R57T | Q9Y3B2 | protein_coding | tolerated(0.25) | benign(0.278) | TCGA-C5-A1MK-01 | Cervix | cervical & endocervical cancer | Female | >=65 | III/IV | Chemotherapy | carboplatin | PD |
EXOSC1 | SNV | Missense_Mutation | novel | c.241C>T | p.Arg81Cys | p.R81C | Q9Y3B2 | protein_coding | deleterious(0) | benign(0.015) | TCGA-EA-A3HS-01 | Cervix | cervical & endocervical cancer | Female | <65 | I/II | Unknown | Unknown | SD |
EXOSC1 | SNV | Missense_Mutation | novel | c.289A>G | p.Asn97Asp | p.N97D | Q9Y3B2 | protein_coding | tolerated(0.36) | benign(0) | TCGA-D5-6930-01 | Colorectum | colon adenocarcinoma | Male | >=65 | I/II | Unknown | Unknown | SD |
EXOSC1 | SNV | Missense_Mutation | novel | c.350N>G | p.Glu117Gly | p.E117G | Q9Y3B2 | protein_coding | deleterious(0) | probably_damaging(0.999) | TCGA-A5-A0G2-01 | Endometrium | uterine corpus endometrioid carcinoma | Female | <65 | III/IV | Unknown | Unknown | SD |
EXOSC1 | SNV | Missense_Mutation | novel | c.401C>T | p.Ser134Phe | p.S134F | Q9Y3B2 | protein_coding | deleterious(0.01) | probably_damaging(0.999) | TCGA-AP-A1DK-01 | Endometrium | uterine corpus endometrioid carcinoma | Female | <65 | I/II | Unknown | Unknown | SD |
EXOSC1 | SNV | Missense_Mutation | novel | c.354N>G | p.Ile118Met | p.I118M | Q9Y3B2 | protein_coding | tolerated(1) | benign(0.018) | TCGA-BK-A6W3-01 | Endometrium | uterine corpus endometrioid carcinoma | Female | <65 | I/II | Unknown | Unknown | SD |
EXOSC1 | SNV | Missense_Mutation | c.322N>A | p.Val108Ile | p.V108I | Q9Y3B2 | protein_coding | tolerated(0.3) | benign(0.003) | TCGA-55-A490-01 | Lung | lung adenocarcinoma | Male | >=65 | I/II | Chemotherapy | carboplatin | SD | |
EXOSC1 | deletion | Frame_Shift_Del | novel | c.166delN | p.Val56Ter | p.V56* | Q9Y3B2 | protein_coding | TCGA-MP-A4T2-01 | Lung | lung adenocarcinoma | Male | >=65 | I/II | Unknown | Unknown | PD | ||
EXOSC1 | SNV | Missense_Mutation | c.546N>G | p.Phe182Leu | p.F182L | Q9Y3B2 | protein_coding | tolerated(0.7) | benign(0) | TCGA-BR-6563-01 | Stomach | stomach adenocarcinoma | Male | <65 | I/II | Chemotherapy | doxorubicin | CR |
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Related drugs of malignant transformation related genes |
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(DGIdb 4.0) |
Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
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