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Gene: EIF3CL |
Gene summary for EIF3CL |
 Gene summary. |
| Gene information | Species | Human | Gene symbol | EIF3CL | Gene ID | 728689 |
| Gene name | eukaryotic translation initiation factor 3 subunit C like | |
| Gene Alias | EIF3CL | |
| Cytomap | 16p12.1 | |
| Gene Type | protein-coding | GO ID | GO:0001732 | UniProtAcc | B5ME19 |
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Malignant transformation analysis |
| Identification of the aberrant gene expression in precancerous and cancerous lesions by comparing the gene expression of stem-like cells in diseased tissues with normal stem cells |
| Malignant transformation involving gene list. |
| Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
| 728689 | EIF3CL | HTA11_3410_2000001011 | Human | Colorectum | AD | 2.36e-09 | 2.69e-01 | 0.0155 |
| 728689 | EIF3CL | HTA11_2487_2000001011 | Human | Colorectum | SER | 8.70e-28 | 7.03e-01 | -0.1808 |
| 728689 | EIF3CL | HTA11_2951_2000001011 | Human | Colorectum | AD | 1.27e-07 | 4.95e-01 | 0.0216 |
| 728689 | EIF3CL | HTA11_1938_2000001011 | Human | Colorectum | AD | 3.16e-20 | 6.05e-01 | -0.0811 |
| 728689 | EIF3CL | HTA11_78_2000001011 | Human | Colorectum | AD | 2.46e-32 | 9.89e-01 | -0.1088 |
| 728689 | EIF3CL | HTA11_347_2000001011 | Human | Colorectum | AD | 4.20e-27 | 5.82e-01 | -0.1954 |
| 728689 | EIF3CL | HTA11_411_2000001011 | Human | Colorectum | SER | 5.15e-11 | 7.81e-01 | -0.2602 |
| 728689 | EIF3CL | HTA11_2112_2000001011 | Human | Colorectum | SER | 3.87e-04 | 5.40e-01 | -0.2196 |
| 728689 | EIF3CL | HTA11_3361_2000001011 | Human | Colorectum | AD | 3.29e-20 | 6.52e-01 | -0.1207 |
| 728689 | EIF3CL | HTA11_83_2000001011 | Human | Colorectum | SER | 4.92e-15 | 5.23e-01 | -0.1526 |
| 728689 | EIF3CL | HTA11_696_2000001011 | Human | Colorectum | AD | 4.43e-42 | 7.90e-01 | -0.1464 |
| 728689 | EIF3CL | HTA11_866_2000001011 | Human | Colorectum | AD | 4.34e-31 | 6.38e-01 | -0.1001 |
| 728689 | EIF3CL | HTA11_1391_2000001011 | Human | Colorectum | AD | 1.30e-32 | 8.65e-01 | -0.059 |
| 728689 | EIF3CL | HTA11_2992_2000001011 | Human | Colorectum | SER | 1.10e-03 | 4.45e-01 | -0.1706 |
| 728689 | EIF3CL | HTA11_5212_2000001011 | Human | Colorectum | AD | 1.29e-05 | 4.21e-01 | -0.2061 |
| 728689 | EIF3CL | HTA11_5216_2000001011 | Human | Colorectum | SER | 5.09e-05 | 3.70e-01 | -0.1462 |
| 728689 | EIF3CL | HTA11_546_2000001011 | Human | Colorectum | AD | 6.48e-16 | 6.63e-01 | -0.0842 |
| 728689 | EIF3CL | HTA11_7862_2000001011 | Human | Colorectum | AD | 9.68e-08 | 3.85e-01 | -0.0179 |
| 728689 | EIF3CL | HTA11_866_3004761011 | Human | Colorectum | AD | 6.18e-17 | 3.76e-01 | 0.096 |
| 728689 | EIF3CL | HTA11_4255_2000001011 | Human | Colorectum | SER | 1.16e-11 | 6.76e-01 | 0.0446 |
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| Transcriptomic changes along malignancy continuum. |
| Tissue | Expression Dynamics | Abbreviation |
| Colorectum (GSE201348) |  | FAP: Familial adenomatous polyposis |
| CRC: Colorectal cancer | ||
| Colorectum (HTA11) |  | AD: Adenomas |
| SER: Sessile serrated lesions | ||
| MSI-H: Microsatellite-high colorectal cancer | ||
| MSS: Microsatellite stable colorectal cancer | ||
| Endometrium |  | AEH: Atypical endometrial hyperplasia |
| EEC: Endometrioid Cancer |
| ∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
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Malignant transformation related pathway analysis |
| Find out the enriched GO biological processes and KEGG pathways involved in transition from healthy to precancer to cancer |
| Figure of enriched GO biological processes. |
| Tissue | Disease Stage | Enriched GO biological Processes |
| Colorectum | AD |  |
| Colorectum | SER |  |
| Colorectum | MSS |  |
| Colorectum | MSI-H |  |
| Colorectum | FAP |  |
| ∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
| Page: 1 2 3 4 5 6 7 8 9 |
| Enriched GO biological processes. |
| GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
| GO:0002181 | Colorectum | AD | cytoplasmic translation | 109/3918 | 148/18723 | 3.40e-43 | 2.13e-39 | 109 |
| GO:0022618 | Colorectum | AD | ribonucleoprotein complex assembly | 92/3918 | 220/18723 | 1.49e-12 | 2.60e-10 | 92 |
| GO:0071826 | Colorectum | AD | ribonucleoprotein complex subunit organization | 94/3918 | 227/18723 | 1.70e-12 | 2.87e-10 | 94 |
| GO:0022613 | Colorectum | AD | ribonucleoprotein complex biogenesis | 151/3918 | 463/18723 | 1.96e-09 | 1.39e-07 | 151 |
| GO:0002183 | Colorectum | AD | cytoplasmic translational initiation | 21/3918 | 34/18723 | 2.73e-07 | 1.09e-05 | 21 |
| GO:0001732 | Colorectum | AD | formation of cytoplasmic translation initiation complex | 13/3918 | 16/18723 | 4.27e-07 | 1.64e-05 | 13 |
| GO:0006413 | Colorectum | AD | translational initiation | 45/3918 | 118/18723 | 1.35e-05 | 2.92e-04 | 45 |
| GO:00021811 | Colorectum | SER | cytoplasmic translation | 102/2897 | 148/18723 | 1.38e-48 | 8.49e-45 | 102 |
| GO:00226181 | Colorectum | SER | ribonucleoprotein complex assembly | 69/2897 | 220/18723 | 2.25e-09 | 2.15e-07 | 69 |
| GO:00718261 | Colorectum | SER | ribonucleoprotein complex subunit organization | 70/2897 | 227/18723 | 3.83e-09 | 3.51e-07 | 70 |
| GO:00021831 | Colorectum | SER | cytoplasmic translational initiation | 18/2897 | 34/18723 | 4.42e-07 | 2.24e-05 | 18 |
| GO:00226131 | Colorectum | SER | ribonucleoprotein complex biogenesis | 112/2897 | 463/18723 | 5.01e-07 | 2.48e-05 | 112 |
| GO:00017321 | Colorectum | SER | formation of cytoplasmic translation initiation complex | 10/2897 | 16/18723 | 2.52e-05 | 6.96e-04 | 10 |
| GO:00064131 | Colorectum | SER | translational initiation | 36/2897 | 118/18723 | 2.84e-05 | 7.63e-04 | 36 |
| GO:00021812 | Colorectum | MSS | cytoplasmic translation | 108/3467 | 148/18723 | 1.78e-47 | 1.11e-43 | 108 |
| GO:00718262 | Colorectum | MSS | ribonucleoprotein complex subunit organization | 90/3467 | 227/18723 | 6.88e-14 | 1.78e-11 | 90 |
| GO:00226182 | Colorectum | MSS | ribonucleoprotein complex assembly | 88/3467 | 220/18723 | 7.12e-14 | 1.78e-11 | 88 |
| GO:00226132 | Colorectum | MSS | ribonucleoprotein complex biogenesis | 144/3467 | 463/18723 | 2.76e-11 | 3.67e-09 | 144 |
| GO:00021832 | Colorectum | MSS | cytoplasmic translational initiation | 21/3467 | 34/18723 | 2.99e-08 | 1.67e-06 | 21 |
| GO:00017322 | Colorectum | MSS | formation of cytoplasmic translation initiation complex | 13/3467 | 16/18723 | 9.42e-08 | 4.63e-06 | 13 |
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| Enriched KEGG pathways. |
| Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
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Cell-cell communication analysis |
| Identification of potential cell-cell interactions between two cell types and their ligand-receptor pairs for different disease states |
| Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
| Page: 1 |
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Single-cell gene regulatory network inference analysis |
| Find out the significant the regulons (TFs) and the target genes of each regulon across cell types for different disease states |
| TF | Cell Type | Tissue | Disease Stage | Target Gene | RSS | Regulon Activity |
| ∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
| Page: 1 |
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Somatic mutation of malignant transformation related genes |
| Annotation of somatic variants for genes involved in malignant transformation |
| Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
| EIF3CL | SNV | Missense_Mutation | novel | c.972N>C | p.Glu324Asp | p.E324D | B5ME19 | protein_coding | tolerated(0.1) | possibly_damaging(0.717) | TCGA-A2-A4S1-01 | Breast | breast invasive carcinoma | Female | >=65 | I/II | Unknown | Unknown | SD |
| EIF3CL | SNV | Missense_Mutation | novel | c.885G>C | p.Glu295Asp | p.E295D | B5ME19 | protein_coding | tolerated(0.62) | benign(0) | TCGA-BH-A1FU-01 | Breast | breast invasive carcinoma | Female | <65 | I/II | Unknown | Unknown | PD |
| EIF3CL | SNV | Missense_Mutation | novel | c.1042N>T | p.Arg348Cys | p.R348C | B5ME19 | protein_coding | deleterious(0) | probably_damaging(0.995) | TCGA-AA-A010-01 | Colorectum | colon adenocarcinoma | Female | <65 | I/II | Chemotherapy | folinic | CR |
| EIF3CL | SNV | Missense_Mutation | novel | c.1034N>T | p.Gly345Val | p.G345V | B5ME19 | protein_coding | tolerated(0.07) | probably_damaging(0.954) | TCGA-A5-A0G1-01 | Endometrium | uterine corpus endometrioid carcinoma | Female | >=65 | I/II | Unknown | Unknown | SD |
| EIF3CL | SNV | Missense_Mutation | novel | c.1018G>A | p.Ala340Thr | p.A340T | B5ME19 | protein_coding | deleterious(0.04) | possibly_damaging(0.579) | TCGA-AP-A0LN-01 | Endometrium | uterine corpus endometrioid carcinoma | Female | <65 | I/II | Unknown | Unknown | SD |
| EIF3CL | SNV | Missense_Mutation | novel | c.1043N>A | p.Arg348His | p.R348H | B5ME19 | protein_coding | deleterious(0) | possibly_damaging(0.88) | TCGA-EO-A22U-01 | Endometrium | uterine corpus endometrioid carcinoma | Female | >=65 | I/II | Unknown | Unknown | SD |
| EIF3CL | SNV | Missense_Mutation | novel | c.1043N>A | p.Arg348His | p.R348H | B5ME19 | protein_coding | deleterious(0) | possibly_damaging(0.88) | TCGA-EY-A1H0-01 | Endometrium | uterine corpus endometrioid carcinoma | Female | <65 | III/IV | Chemotherapy | taxol | SD |
| EIF3CL | insertion | Frame_Shift_Ins | novel | c.952_953insA | p.Met318AsnfsTer7 | p.M318Nfs*7 | B5ME19 | protein_coding | TCGA-B5-A3FA-01 | Endometrium | uterine corpus endometrioid carcinoma | Female | >=65 | I/II | Unknown | Unknown | SD |
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Related drugs of malignant transformation related genes |
| Identification of chemicals and drugs interact with genes involved in malignant transfromation |
| (DGIdb 4.0) |
| Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
| Page: 1 |
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