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Gene: EDARADD |
Gene summary for EDARADD |
 Gene summary. |
| Gene information | Species | Human | Gene symbol | EDARADD | Gene ID | 128178 |
| Gene name | EDAR associated death domain | |
| Gene Alias | ECTD11A | |
| Cytomap | 1q42.3-q43 | |
| Gene Type | protein-coding | GO ID | GO:0007154 | UniProtAcc | Q8WWZ3 |
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Malignant transformation analysis |
| Identification of the aberrant gene expression in precancerous and cancerous lesions by comparing the gene expression of stem-like cells in diseased tissues with normal stem cells |
| Malignant transformation involving gene list. |
| Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
| 128178 | EDARADD | GSM5276935 | Human | Endometrium | EEC | 6.93e-03 | 1.27e-01 | -0.123 |
| 128178 | EDARADD | GSM6177620_NYU_UCEC1_lib1_lib1 | Human | Endometrium | EEC | 6.51e-06 | 3.80e-01 | -0.1869 |
| 128178 | EDARADD | GSM6177620_NYU_UCEC1_lib2_lib2 | Human | Endometrium | EEC | 9.72e-11 | 5.26e-01 | -0.1875 |
| 128178 | EDARADD | GSM6177620_NYU_UCEC1_lib3_lib3 | Human | Endometrium | EEC | 2.80e-16 | 6.48e-01 | -0.1883 |
| 128178 | EDARADD | GSM6177622_NYU_UCEC3_lib1_lib1 | Human | Endometrium | EEC | 5.33e-10 | 4.19e-01 | -0.1917 |
| 128178 | EDARADD | GSM6177622_NYU_UCEC3_lib2_lib2 | Human | Endometrium | EEC | 7.84e-05 | 2.95e-01 | -0.1916 |
| 128178 | EDARADD | LZE20T | Human | Esophagus | ESCC | 1.30e-10 | 2.69e-01 | 0.0662 |
| 128178 | EDARADD | LZE22T | Human | Esophagus | ESCC | 1.54e-04 | 2.85e-01 | 0.068 |
| 128178 | EDARADD | LZE24T | Human | Esophagus | ESCC | 8.01e-19 | 4.27e-01 | 0.0596 |
| 128178 | EDARADD | LZE22D3 | Human | Esophagus | HGIN | 1.73e-02 | 4.18e-01 | 0.0653 |
| 128178 | EDARADD | LZE6T | Human | Esophagus | ESCC | 9.61e-05 | 2.12e-01 | 0.0845 |
| 128178 | EDARADD | P1T-E | Human | Esophagus | ESCC | 1.05e-09 | 4.08e-01 | 0.0875 |
| 128178 | EDARADD | P2T-E | Human | Esophagus | ESCC | 1.54e-16 | 3.78e-01 | 0.1177 |
| 128178 | EDARADD | P4T-E | Human | Esophagus | ESCC | 1.36e-04 | 1.13e-01 | 0.1323 |
| 128178 | EDARADD | P8T-E | Human | Esophagus | ESCC | 6.70e-11 | 2.78e-01 | 0.0889 |
| 128178 | EDARADD | P10T-E | Human | Esophagus | ESCC | 1.38e-13 | 3.48e-01 | 0.116 |
| 128178 | EDARADD | P11T-E | Human | Esophagus | ESCC | 1.23e-16 | 4.55e-01 | 0.1426 |
| 128178 | EDARADD | P12T-E | Human | Esophagus | ESCC | 4.56e-09 | 1.59e-01 | 0.1122 |
| 128178 | EDARADD | P15T-E | Human | Esophagus | ESCC | 3.34e-06 | 1.40e-01 | 0.1149 |
| 128178 | EDARADD | P16T-E | Human | Esophagus | ESCC | 1.59e-14 | 1.57e-01 | 0.1153 |
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| Transcriptomic changes along malignancy continuum. |
| Tissue | Expression Dynamics | Abbreviation |
| Endometrium |  | AEH: Atypical endometrial hyperplasia |
| EEC: Endometrioid Cancer | ||
| Esophagus |  | ESCC: Esophageal squamous cell carcinoma |
| HGIN: High-grade intraepithelial neoplasias | ||
| LGIN: Low-grade intraepithelial neoplasias | ||
| Oral Cavity |  | EOLP: Erosive Oral lichen planus |
| LP: leukoplakia | ||
| NEOLP: Non-erosive oral lichen planus | ||
| OSCC: Oral squamous cell carcinoma |
| ∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
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Malignant transformation related pathway analysis |
| Find out the enriched GO biological processes and KEGG pathways involved in transition from healthy to precancer to cancer |
| Figure of enriched GO biological processes. |
| Tissue | Disease Stage | Enriched GO biological Processes |
| Colorectum | AD |  |
| Colorectum | SER |  |
| Colorectum | MSS |  |
| Colorectum | MSI-H |  |
| Colorectum | FAP |  |
| ∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
| Page: 1 2 3 4 5 6 7 8 9 |
| Enriched GO biological processes. |
| GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
| GO:190122411 | Endometrium | EEC | positive regulation of NIK/NF-kappaB signaling | 19/2168 | 69/18723 | 2.27e-04 | 2.70e-03 | 19 |
| GO:19012222 | Endometrium | EEC | regulation of NIK/NF-kappaB signaling | 24/2168 | 112/18723 | 2.00e-03 | 1.51e-02 | 24 |
| GO:00380612 | Endometrium | EEC | NIK/NF-kappaB signaling | 27/2168 | 143/18723 | 6.99e-03 | 4.01e-02 | 27 |
| GO:19012247 | Esophagus | HGIN | positive regulation of NIK/NF-kappaB signaling | 18/2587 | 69/18723 | 4.94e-03 | 4.18e-02 | 18 |
| GO:190122414 | Esophagus | ESCC | positive regulation of NIK/NF-kappaB signaling | 44/8552 | 69/18723 | 1.86e-03 | 8.42e-03 | 44 |
| GO:00380615 | Esophagus | ESCC | NIK/NF-kappaB signaling | 81/8552 | 143/18723 | 5.33e-03 | 2.00e-02 | 81 |
| GO:00380614 | Oral cavity | OSCC | NIK/NF-kappaB signaling | 78/7305 | 143/18723 | 1.14e-04 | 8.35e-04 | 78 |
| GO:19012246 | Oral cavity | OSCC | positive regulation of NIK/NF-kappaB signaling | 40/7305 | 69/18723 | 1.08e-03 | 5.56e-03 | 40 |
| GO:19012224 | Oral cavity | OSCC | regulation of NIK/NF-kappaB signaling | 59/7305 | 112/18723 | 2.25e-03 | 1.00e-02 | 59 |
| GO:190122212 | Oral cavity | LP | regulation of NIK/NF-kappaB signaling | 44/4623 | 112/18723 | 4.38e-04 | 4.19e-03 | 44 |
| GO:190122413 | Oral cavity | LP | positive regulation of NIK/NF-kappaB signaling | 29/4623 | 69/18723 | 1.15e-03 | 9.40e-03 | 29 |
| GO:003806112 | Oral cavity | LP | NIK/NF-kappaB signaling | 52/4623 | 143/18723 | 1.20e-03 | 9.66e-03 | 52 |
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| Enriched KEGG pathways. |
| Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
| hsa040645 | Esophagus | ESCC | NF-kappa B signaling pathway | 67/4205 | 104/8465 | 1.62e-03 | 4.89e-03 | 2.50e-03 | 67 |
| hsa0406412 | Esophagus | ESCC | NF-kappa B signaling pathway | 67/4205 | 104/8465 | 1.62e-03 | 4.89e-03 | 2.50e-03 | 67 |
| hsa040644 | Oral cavity | OSCC | NF-kappa B signaling pathway | 67/3704 | 104/8465 | 1.57e-05 | 6.75e-05 | 3.44e-05 | 67 |
| hsa0406411 | Oral cavity | OSCC | NF-kappa B signaling pathway | 67/3704 | 104/8465 | 1.57e-05 | 6.75e-05 | 3.44e-05 | 67 |
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Cell-cell communication analysis |
| Identification of potential cell-cell interactions between two cell types and their ligand-receptor pairs for different disease states |
| Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
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Single-cell gene regulatory network inference analysis |
| Find out the significant the regulons (TFs) and the target genes of each regulon across cell types for different disease states |
| TF | Cell Type | Tissue | Disease Stage | Target Gene | RSS | Regulon Activity |
| ∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
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Somatic mutation of malignant transformation related genes |
| Annotation of somatic variants for genes involved in malignant transformation |
| Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
| EDARADD | SNV | Missense_Mutation | c.575N>G | p.Glu192Gly | p.E192G | Q8WWZ3 | protein_coding | tolerated(0.07) | probably_damaging(0.909) | TCGA-B6-A0RT-01 | Breast | breast invasive carcinoma | Female | <65 | III/IV | Unknown | Unknown | SD | |
| EDARADD | SNV | Missense_Mutation | novel | c.284N>T | p.Ser95Phe | p.S95F | Q8WWZ3 | protein_coding | deleterious(0.03) | benign(0.08) | TCGA-BH-A0HF-01 | Breast | breast invasive carcinoma | Female | >=65 | I/II | Hormone Therapy | arimidex | SD |
| EDARADD | insertion | Frame_Shift_Ins | novel | c.212_213insCTTTTCTGCC | p.Lys71AsnfsTer15 | p.K71Nfs*15 | Q8WWZ3 | protein_coding | TCGA-BH-A0HK-01 | Breast | breast invasive carcinoma | Female | >=65 | I/II | Hormone Therapy | arimidex | SD | ||
| EDARADD | insertion | Nonsense_Mutation | novel | c.213_214insTGAGGGTTTTCCTTAATTAATTAACT | p.Asn72Ter | p.N72* | Q8WWZ3 | protein_coding | TCGA-BH-A0HK-01 | Breast | breast invasive carcinoma | Female | >=65 | I/II | Hormone Therapy | arimidex | SD | ||
| EDARADD | SNV | Missense_Mutation | c.133N>T | p.Pro45Ser | p.P45S | Q8WWZ3 | protein_coding | deleterious(0.01) | possibly_damaging(0.491) | TCGA-Q1-A6DT-01 | Cervix | cervical & endocervical cancer | Female | <65 | I/II | Unknown | Unknown | PD | |
| EDARADD | SNV | Missense_Mutation | c.415T>C | p.Trp139Arg | p.W139R | Q8WWZ3 | protein_coding | deleterious(0) | probably_damaging(1) | TCGA-AA-A00N-01 | Colorectum | colon adenocarcinoma | Male | >=65 | I/II | Unknown | Unknown | PD | |
| EDARADD | SNV | Missense_Mutation | rs763414523 | c.586C>T | p.Arg196Cys | p.R196C | Q8WWZ3 | protein_coding | deleterious(0.01) | possibly_damaging(0.745) | TCGA-AZ-4614-01 | Colorectum | colon adenocarcinoma | Female | >=65 | I/II | Unknown | Unknown | PD |
| EDARADD | SNV | Missense_Mutation | c.178N>C | p.Ile60Leu | p.I60L | Q8WWZ3 | protein_coding | tolerated(0.14) | benign(0) | TCGA-CM-5863-01 | Colorectum | colon adenocarcinoma | Female | <65 | III/IV | Chemotherapy | oxaliplatin | SD | |
| EDARADD | SNV | Missense_Mutation | novel | c.202N>G | p.Ser68Ala | p.S68A | Q8WWZ3 | protein_coding | tolerated(0.13) | benign(0.04) | TCGA-EI-6917-01 | Colorectum | rectum adenocarcinoma | Male | <65 | III/IV | Chemotherapy | 5fluorouracil+oxaciplatina+l-folinian | SD |
| EDARADD | SNV | Missense_Mutation | novel | c.610N>T | p.Pro204Ser | p.P204S | Q8WWZ3 | protein_coding | deleterious(0) | probably_damaging(0.997) | TCGA-AP-A1DP-01 | Endometrium | uterine corpus endometrioid carcinoma | Female | >=65 | I/II | Chemotherapy | paclitaxel | PD |
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Related drugs of malignant transformation related genes |
| Identification of chemicals and drugs interact with genes involved in malignant transfromation |
| (DGIdb 4.0) |
| Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
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