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Gene: CUTA |
Gene summary for CUTA |
 Gene summary. |
| Gene information | Species | Human | Gene symbol | CUTA | Gene ID | 51596 |
| Gene name | cutA divalent cation tolerance homolog | |
| Gene Alias | ACHAP | |
| Cytomap | 6p21.32 | |
| Gene Type | protein-coding | GO ID | GO:0008104 | UniProtAcc | O60888 |
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Malignant transformation analysis |
| Identification of the aberrant gene expression in precancerous and cancerous lesions by comparing the gene expression of stem-like cells in diseased tissues with normal stem cells |
| Malignant transformation involving gene list. |
| Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
| 51596 | CUTA | GSM4909281 | Human | Breast | IDC | 1.60e-52 | 6.97e-01 | 0.21 |
| 51596 | CUTA | GSM4909282 | Human | Breast | IDC | 3.58e-06 | 2.84e-01 | -0.0288 |
| 51596 | CUTA | GSM4909285 | Human | Breast | IDC | 5.02e-26 | 5.53e-01 | 0.21 |
| 51596 | CUTA | GSM4909289 | Human | Breast | IDC | 7.26e-18 | 6.36e-01 | 0.1064 |
| 51596 | CUTA | GSM4909294 | Human | Breast | IDC | 3.15e-10 | -2.48e-01 | 0.2022 |
| 51596 | CUTA | GSM4909296 | Human | Breast | IDC | 2.80e-12 | 2.53e-02 | 0.1524 |
| 51596 | CUTA | GSM4909297 | Human | Breast | IDC | 3.02e-26 | -3.63e-02 | 0.1517 |
| 51596 | CUTA | GSM4909301 | Human | Breast | IDC | 4.87e-06 | 2.20e-01 | 0.1577 |
| 51596 | CUTA | GSM4909306 | Human | Breast | IDC | 6.04e-05 | 3.60e-01 | 0.1564 |
| 51596 | CUTA | GSM4909307 | Human | Breast | IDC | 1.54e-12 | 4.10e-01 | 0.1569 |
| 51596 | CUTA | GSM4909308 | Human | Breast | IDC | 1.14e-16 | 4.46e-01 | 0.158 |
| 51596 | CUTA | GSM4909309 | Human | Breast | IDC | 5.40e-07 | 1.28e-01 | 0.0483 |
| 51596 | CUTA | GSM4909311 | Human | Breast | IDC | 2.77e-54 | -1.17e-02 | 0.1534 |
| 51596 | CUTA | GSM4909312 | Human | Breast | IDC | 6.39e-19 | 1.95e-01 | 0.1552 |
| 51596 | CUTA | GSM4909313 | Human | Breast | IDC | 7.76e-10 | 1.15e-01 | 0.0391 |
| 51596 | CUTA | GSM4909316 | Human | Breast | IDC | 5.97e-03 | -2.61e-01 | 0.21 |
| 51596 | CUTA | GSM4909319 | Human | Breast | IDC | 7.88e-69 | -1.63e-01 | 0.1563 |
| 51596 | CUTA | GSM4909320 | Human | Breast | IDC | 4.35e-06 | -2.30e-01 | 0.1575 |
| 51596 | CUTA | GSM4909321 | Human | Breast | IDC | 7.23e-23 | 3.96e-02 | 0.1559 |
| 51596 | CUTA | NCCBC14 | Human | Breast | DCIS | 5.76e-23 | -5.20e-01 | 0.2021 |
| Page: 1 2 3 4 5 6 7 8 9 10 11 12 13 |
| Transcriptomic changes along malignancy continuum. |
| Tissue | Expression Dynamics | Abbreviation |
| Breast |  | IDC: Invasive ductal carcinoma |
| DCIS: Ductal carcinoma in situ | ||
| Precancer(BRCA1-mut): Precancerous lesion from BRCA1 mutation carriers | ||
| Cervix |  | CC: Cervix cancer |
| HSIL_HPV: HPV-infected high-grade squamous intraepithelial lesions | ||
| N_HPV: HPV-infected normal cervix | ||
| Colorectum (GSE201348) |  | FAP: Familial adenomatous polyposis |
| CRC: Colorectal cancer | ||
| Colorectum (HTA11) |  | AD: Adenomas |
| SER: Sessile serrated lesions | ||
| MSI-H: Microsatellite-high colorectal cancer | ||
| MSS: Microsatellite stable colorectal cancer | ||
| Endometrium |  | AEH: Atypical endometrial hyperplasia |
| EEC: Endometrioid Cancer | ||
| Esophagus |  | ESCC: Esophageal squamous cell carcinoma |
| HGIN: High-grade intraepithelial neoplasias | ||
| LGIN: Low-grade intraepithelial neoplasias | ||
| Liver |  | HCC: Hepatocellular carcinoma |
| NAFLD: Non-alcoholic fatty liver disease | ||
| Oral Cavity |  | EOLP: Erosive Oral lichen planus |
| LP: leukoplakia | ||
| NEOLP: Non-erosive oral lichen planus | ||
| OSCC: Oral squamous cell carcinoma | ||
| Prostate |  | BPH: Benign Prostatic Hyperplasia |
| Skin |  | AK: Actinic keratosis |
| cSCC: Cutaneous squamous cell carcinoma | ||
| SCCIS:squamous cell carcinoma in situ | ||
| Thyroid |  | ATC: Anaplastic thyroid cancer |
| HT: Hashimoto's thyroiditis | ||
| PTC: Papillary thyroid cancer |
| ∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
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Malignant transformation related pathway analysis |
| Find out the enriched GO biological processes and KEGG pathways involved in transition from healthy to precancer to cancer |
| Figure of enriched GO biological processes. |
| Tissue | Disease Stage | Enriched GO biological Processes |
| Colorectum | AD |  |
| Colorectum | SER |  |
| Colorectum | MSS |  |
| Colorectum | MSI-H |  |
| Colorectum | FAP |  |
| ∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
| Page: 1 2 3 4 5 6 7 8 9 |
| Enriched GO biological processes. |
| GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
| GO:001003814 | Breast | IDC | response to metal ion | 65/1434 | 373/18723 | 2.95e-10 | 3.42e-08 | 65 |
| GO:001003824 | Breast | DCIS | response to metal ion | 65/1390 | 373/18723 | 8.03e-11 | 9.88e-09 | 65 |
| GO:001003810 | Cervix | CC | response to metal ion | 67/2311 | 373/18723 | 9.67e-04 | 8.10e-03 | 67 |
| GO:001003815 | Cervix | HSIL_HPV | response to metal ion | 36/737 | 373/18723 | 7.19e-07 | 3.65e-05 | 36 |
| GO:0010038 | Colorectum | AD | response to metal ion | 106/3918 | 373/18723 | 3.22e-04 | 3.83e-03 | 106 |
| GO:00100381 | Colorectum | SER | response to metal ion | 84/2897 | 373/18723 | 1.87e-04 | 3.44e-03 | 84 |
| GO:00100382 | Colorectum | MSS | response to metal ion | 90/3467 | 373/18723 | 3.76e-03 | 2.76e-02 | 90 |
| GO:00100383 | Colorectum | MSI-H | response to metal ion | 41/1319 | 373/18723 | 3.09e-03 | 3.87e-02 | 41 |
| GO:001003816 | Endometrium | AEH | response to metal ion | 65/2100 | 373/18723 | 2.02e-04 | 2.54e-03 | 65 |
| GO:001003817 | Endometrium | EEC | response to metal ion | 66/2168 | 373/18723 | 2.86e-04 | 3.23e-03 | 66 |
| GO:001003827 | Esophagus | ESCC | response to metal ion | 208/8552 | 373/18723 | 5.02e-05 | 3.90e-04 | 208 |
| GO:001003812 | Liver | Cirrhotic | response to metal ion | 150/4634 | 373/18723 | 2.27e-11 | 1.37e-09 | 150 |
| GO:001003822 | Liver | HCC | response to metal ion | 208/7958 | 373/18723 | 1.35e-07 | 2.56e-06 | 208 |
| GO:001003820 | Oral cavity | OSCC | response to metal ion | 188/7305 | 373/18723 | 4.34e-06 | 5.00e-05 | 188 |
| GO:0010038110 | Oral cavity | LP | response to metal ion | 124/4623 | 373/18723 | 1.09e-04 | 1.31e-03 | 124 |
| GO:001003818 | Prostate | BPH | response to metal ion | 104/3107 | 373/18723 | 2.32e-08 | 6.99e-07 | 104 |
| GO:001003819 | Prostate | Tumor | response to metal ion | 107/3246 | 373/18723 | 3.02e-08 | 9.77e-07 | 107 |
| GO:001003829 | Skin | cSCC | response to metal ion | 132/4864 | 373/18723 | 3.11e-05 | 3.42e-04 | 132 |
| GO:001003830 | Thyroid | HT | response to metal ion | 50/1272 | 373/18723 | 3.12e-06 | 1.08e-04 | 50 |
| GO:0010038112 | Thyroid | PTC | response to metal ion | 157/5968 | 373/18723 | 1.80e-05 | 1.86e-04 | 157 |
| Page: 1 2 |
| Enriched KEGG pathways. |
| Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
| Page: 1 |
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Cell-cell communication analysis |
| Identification of potential cell-cell interactions between two cell types and their ligand-receptor pairs for different disease states |
| Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
| Page: 1 |
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Single-cell gene regulatory network inference analysis |
| Find out the significant the regulons (TFs) and the target genes of each regulon across cell types for different disease states |
| TF | Cell Type | Tissue | Disease Stage | Target Gene | RSS | Regulon Activity |
| ∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
| Page: 1 |
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Somatic mutation of malignant transformation related genes |
| Annotation of somatic variants for genes involved in malignant transformation |
| Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
| CUTA | insertion | Frame_Shift_Ins | novel | c.421-1_421insTACTGCACAGAGCCATCAGGCCGTACTCTCCGAGCAAGGACCCGGA | p.Met141TyrfsTer18 | p.M141Yfs*18 | O60888 | protein_coding | TCGA-A8-A097-01 | Breast | breast invasive carcinoma | Female | >=65 | I/II | Hormone Therapy | tamoxiphen | SD | ||
| CUTA | SNV | Missense_Mutation | c.26C>T | p.Ser9Phe | p.S9F | O60888 | protein_coding | tolerated_low_confidence(1) | benign(0) | TCGA-IR-A3LK-01 | Cervix | cervical & endocervical cancer | Female | >=65 | I/II | Chemotherapy | cisplatin | PD | |
| CUTA | SNV | Missense_Mutation | novel | c.134N>T | p.Ala45Val | p.A45V | O60888 | protein_coding | tolerated(0.09) | benign(0.003) | TCGA-AJ-A3BH-01 | Endometrium | uterine corpus endometrioid carcinoma | Female | Unknown | I/II | Unknown | Unknown | SD |
| CUTA | SNV | Missense_Mutation | novel | c.355N>G | p.Ile119Val | p.I119V | O60888 | protein_coding | tolerated(0.43) | benign(0.02) | TCGA-AP-A1DK-01 | Endometrium | uterine corpus endometrioid carcinoma | Female | <65 | I/II | Unknown | Unknown | SD |
| CUTA | SNV | Missense_Mutation | novel | c.275T>C | p.Val92Ala | p.V92A | O60888 | protein_coding | deleterious(0) | probably_damaging(0.995) | TCGA-B5-A3FA-01 | Endometrium | uterine corpus endometrioid carcinoma | Female | >=65 | I/II | Unknown | Unknown | SD |
| CUTA | SNV | Missense_Mutation | novel | c.265N>A | p.Ala89Thr | p.A89T | O60888 | protein_coding | tolerated(0.07) | possibly_damaging(0.696) | TCGA-DF-A2KU-01 | Endometrium | uterine corpus endometrioid carcinoma | Female | Unknown | I/II | Unknown | Unknown | SD |
| CUTA | SNV | Missense_Mutation | novel | c.346N>A | p.Val116Ile | p.V116I | O60888 | protein_coding | tolerated(0.06) | possibly_damaging(0.829) | TCGA-EO-A22R-01 | Endometrium | uterine corpus endometrioid carcinoma | Female | <65 | I/II | Unknown | Unknown | SD |
| CUTA | SNV | Missense_Mutation | rs780611595 | c.77N>A | p.Ser26Tyr | p.S26Y | O60888 | protein_coding | deleterious_low_confidence(0) | possibly_damaging(0.676) | TCGA-EO-A22X-01 | Endometrium | uterine corpus endometrioid carcinoma | Female | <65 | III/IV | Unspecific | Carboplatin | Complete Response |
| CUTA | SNV | Missense_Mutation | rs762618918 | c.227C>T | p.Ser76Leu | p.S76L | O60888 | protein_coding | tolerated(0.19) | benign(0.003) | TCGA-63-5131-01 | Lung | lung squamous cell carcinoma | Male | Unknown | I/II | Unknown | Unknown | SD |
| CUTA | SNV | Missense_Mutation | novel | c.410A>G | p.Glu137Gly | p.E137G | O60888 | protein_coding | deleterious(0) | probably_damaging(1) | TCGA-CQ-5326-01 | Oral cavity | head & neck squamous cell carcinoma | Male | >=65 | I/II | Unknown | Unknown | PD |
| Page: 1 2 |
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Related drugs of malignant transformation related genes |
| Identification of chemicals and drugs interact with genes involved in malignant transfromation |
| (DGIdb 4.0) |
| Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
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