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Gene: CTGF |
Gene summary for CTGF |
 Gene summary. |
| Gene information | Species | Human | Gene symbol | CTGF | Gene ID | 1490 |
| Gene name | cellular communication network factor 2 | |
| Gene Alias | CTGF | |
| Cytomap | 6q23.2 | |
| Gene Type | protein-coding | GO ID | GO:0000165 | UniProtAcc | P29279 |
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Malignant transformation analysis |
| Identification of the aberrant gene expression in precancerous and cancerous lesions by comparing the gene expression of stem-like cells in diseased tissues with normal stem cells |
| Malignant transformation involving gene list. |
| Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
| 1490 | CTGF | GSM4909281 | Human | Breast | IDC | 2.89e-36 | 8.09e-01 | 0.21 |
| 1490 | CTGF | GSM4909290 | Human | Breast | IDC | 2.63e-03 | -2.33e-01 | 0.2096 |
| 1490 | CTGF | GSM4909295 | Human | Breast | IDC | 3.39e-05 | 6.87e-01 | 0.0898 |
| 1490 | CTGF | GSM4909296 | Human | Breast | IDC | 3.78e-06 | -2.36e-01 | 0.1524 |
| 1490 | CTGF | GSM4909299 | Human | Breast | IDC | 1.37e-03 | 3.01e-01 | 0.035 |
| 1490 | CTGF | GSM4909301 | Human | Breast | IDC | 1.60e-02 | -2.26e-01 | 0.1577 |
| 1490 | CTGF | GSM4909308 | Human | Breast | IDC | 1.66e-03 | -2.15e-01 | 0.158 |
| 1490 | CTGF | GSM4909311 | Human | Breast | IDC | 7.71e-03 | -1.82e-01 | 0.1534 |
| 1490 | CTGF | GSM4909312 | Human | Breast | IDC | 3.78e-06 | -2.44e-01 | 0.1552 |
| 1490 | CTGF | GSM4909315 | Human | Breast | IDC | 8.25e-07 | -2.44e-01 | 0.21 |
| 1490 | CTGF | GSM4909319 | Human | Breast | IDC | 1.72e-05 | -2.44e-01 | 0.1563 |
| 1490 | CTGF | GSM4909321 | Human | Breast | IDC | 6.77e-03 | -2.26e-01 | 0.1559 |
| 1490 | CTGF | NCCBC14 | Human | Breast | DCIS | 9.61e-07 | -2.44e-01 | 0.2021 |
| 1490 | CTGF | NCCBC5 | Human | Breast | DCIS | 1.47e-06 | -2.44e-01 | 0.2046 |
| 1490 | CTGF | P1 | Human | Breast | IDC | 8.84e-05 | -2.27e-01 | 0.1527 |
| 1490 | CTGF | DCIS2 | Human | Breast | DCIS | 2.50e-17 | 1.08e-01 | 0.0085 |
| 1490 | CTGF | P4T-E | Human | Esophagus | ESCC | 8.17e-03 | 9.86e-01 | 0.1323 |
| 1490 | CTGF | P5T-E | Human | Esophagus | ESCC | 1.08e-08 | 1.37e+00 | 0.1327 |
| 1490 | CTGF | P9T-E | Human | Esophagus | ESCC | 6.44e-04 | 1.67e+00 | 0.1131 |
| 1490 | CTGF | P10T-E | Human | Esophagus | ESCC | 5.80e-03 | 5.48e-01 | 0.116 |
| Page: 1 2 3 4 5 6 7 |
| Transcriptomic changes along malignancy continuum. |
| Tissue | Expression Dynamics | Abbreviation |
| Breast |  | IDC: Invasive ductal carcinoma |
| DCIS: Ductal carcinoma in situ | ||
| Precancer(BRCA1-mut): Precancerous lesion from BRCA1 mutation carriers | ||
| Esophagus |  | ESCC: Esophageal squamous cell carcinoma |
| HGIN: High-grade intraepithelial neoplasias | ||
| LGIN: Low-grade intraepithelial neoplasias | ||
| Liver |  | HCC: Hepatocellular carcinoma |
| NAFLD: Non-alcoholic fatty liver disease | ||
| Lung |  | AAH: Atypical adenomatous hyperplasia |
| AIS: Adenocarcinoma in situ | ||
| IAC: Invasive lung adenocarcinoma | ||
| MIA: Minimally invasive adenocarcinoma | ||
| Oral Cavity |  | EOLP: Erosive Oral lichen planus |
| LP: leukoplakia | ||
| NEOLP: Non-erosive oral lichen planus | ||
| OSCC: Oral squamous cell carcinoma | ||
| Prostate |  | BPH: Benign Prostatic Hyperplasia |
| Skin |  | AK: Actinic keratosis |
| cSCC: Cutaneous squamous cell carcinoma | ||
| SCCIS:squamous cell carcinoma in situ | ||
| Thyroid |  | ATC: Anaplastic thyroid cancer |
| HT: Hashimoto's thyroiditis | ||
| PTC: Papillary thyroid cancer |
| ∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
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Malignant transformation related pathway analysis |
| Find out the enriched GO biological processes and KEGG pathways involved in transition from healthy to precancer to cancer |
| Figure of enriched GO biological processes. |
| Tissue | Disease Stage | Enriched GO biological Processes |
| Colorectum | AD |  |
| Colorectum | SER |  |
| Colorectum | MSS |  |
| Colorectum | MSI-H |  |
| Colorectum | FAP |  |
| ∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
| Page: 1 2 3 4 5 6 7 8 9 |
| Enriched GO biological processes. |
| GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
| Page: 1 |
| Enriched KEGG pathways. |
| Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
| hsa043909 | Endometrium | AEH | Hippo signaling pathway | 38/1197 | 157/8465 | 4.79e-04 | 3.38e-03 | 2.47e-03 | 38 |
| hsa0439014 | Endometrium | AEH | Hippo signaling pathway | 38/1197 | 157/8465 | 4.79e-04 | 3.38e-03 | 2.47e-03 | 38 |
| hsa0439023 | Endometrium | EEC | Hippo signaling pathway | 39/1237 | 157/8465 | 4.54e-04 | 3.47e-03 | 2.59e-03 | 39 |
| hsa0439033 | Endometrium | EEC | Hippo signaling pathway | 39/1237 | 157/8465 | 4.54e-04 | 3.47e-03 | 2.59e-03 | 39 |
| Page: 1 |
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Cell-cell communication analysis |
| Identification of potential cell-cell interactions between two cell types and their ligand-receptor pairs for different disease states |
| Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
| Page: 1 |
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Single-cell gene regulatory network inference analysis |
| Find out the significant the regulons (TFs) and the target genes of each regulon across cell types for different disease states |
| TF | Cell Type | Tissue | Disease Stage | Target Gene | RSS | Regulon Activity |
| ∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
| Page: 1 |
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Somatic mutation of malignant transformation related genes |
| Annotation of somatic variants for genes involved in malignant transformation |
| Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
| CTGF | SNV | Missense_Mutation | novel | c.773N>A | p.Arg258His | p.R258H | P29279 | protein_coding | deleterious(0) | probably_damaging(1) | TCGA-A2-A0EW-01 | Breast | breast invasive carcinoma | Female | <65 | III/IV | Chemotherapy | adriamycin | PD |
| CTGF | SNV | Missense_Mutation | c.691G>C | p.Glu231Gln | p.E231Q | P29279 | protein_coding | tolerated(0.09) | probably_damaging(1) | TCGA-A2-A0YK-01 | Breast | breast invasive carcinoma | Female | <65 | I/II | Chemotherapy | cytoxan | SD | |
| CTGF | SNV | Missense_Mutation | c.526N>T | p.Gly176Trp | p.G176W | P29279 | protein_coding | deleterious(0) | probably_damaging(0.994) | TCGA-AO-A128-01 | Breast | breast invasive carcinoma | Female | <65 | I/II | Chemotherapy | doxorubicin | SD | |
| CTGF | SNV | Missense_Mutation | rs754080279 | c.907G>T | p.Val303Leu | p.V303L | P29279 | protein_coding | deleterious(0) | possibly_damaging(0.511) | TCGA-AR-A0TQ-01 | Breast | breast invasive carcinoma | Female | <65 | III/IV | Chemotherapy | doxorubicin | SD |
| CTGF | SNV | Missense_Mutation | rs754080279 | c.907N>T | p.Val303Leu | p.V303L | P29279 | protein_coding | deleterious(0) | possibly_damaging(0.511) | TCGA-AR-A0U3-01 | Breast | breast invasive carcinoma | Female | <65 | I/II | Chemotherapy | doxorubicin | SD |
| CTGF | SNV | Missense_Mutation | novel | c.734N>C | p.Asp245Ala | p.D245A | P29279 | protein_coding | tolerated(0.34) | benign(0.001) | TCGA-B6-A0I8-01 | Breast | breast invasive carcinoma | Female | <65 | I/II | Unknown | Unknown | PD |
| CTGF | SNV | Missense_Mutation | rs754080279 | c.907N>T | p.Val303Leu | p.V303L | P29279 | protein_coding | deleterious(0) | possibly_damaging(0.511) | TCGA-BH-A0BW-01 | Breast | breast invasive carcinoma | Female | >=65 | I/II | Chemotherapy | adriamycin | CR |
| CTGF | SNV | Missense_Mutation | rs754080279 | c.907N>T | p.Val303Leu | p.V303L | P29279 | protein_coding | deleterious(0) | possibly_damaging(0.511) | TCGA-BH-A0H0-01 | Breast | breast invasive carcinoma | Female | >=65 | I/II | Hormone Therapy | arimidex | SD |
| CTGF | SNV | Missense_Mutation | rs754080279 | c.907G>T | p.Val303Leu | p.V303L | P29279 | protein_coding | deleterious(0) | possibly_damaging(0.511) | TCGA-BH-A0HB-01 | Breast | breast invasive carcinoma | Female | <65 | I/II | Chemotherapy | docetaxel | SD |
| CTGF | SNV | Missense_Mutation | rs754080279 | c.907N>T | p.Val303Leu | p.V303L | P29279 | protein_coding | deleterious(0) | possibly_damaging(0.511) | TCGA-C8-A130-01 | Breast | breast invasive carcinoma | Female | <65 | III/IV | Unknown | Unknown | SD |
| Page: 1 2 3 4 5 |
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Related drugs of malignant transformation related genes |
| Identification of chemicals and drugs interact with genes involved in malignant transfromation |
| (DGIdb 4.0) |
| Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
| Page: 1 |
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