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Gene: CORO2A |
Gene summary for CORO2A |
 Gene summary. |
| Gene information | Species | Human | Gene symbol | CORO2A | Gene ID | 7464 |
| Gene name | coronin 2A | |
| Gene Alias | CLIPINB | |
| Cytomap | 9q22.33 | |
| Gene Type | protein-coding | GO ID | GO:0007154 | UniProtAcc | A0A024R150 |
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Malignant transformation analysis |
| Identification of the aberrant gene expression in precancerous and cancerous lesions by comparing the gene expression of stem-like cells in diseased tissues with normal stem cells |
| Malignant transformation involving gene list. |
| Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
| 7464 | CORO2A | CCI_2 | Human | Cervix | CC | 4.99e-04 | 6.07e-01 | 0.5249 |
| 7464 | CORO2A | CCI_3 | Human | Cervix | CC | 6.61e-05 | 4.76e-01 | 0.516 |
| 7464 | CORO2A | HTA11_2487_2000001011 | Human | Colorectum | SER | 2.47e-07 | 6.23e-01 | -0.1808 |
| 7464 | CORO2A | HTA11_347_2000001011 | Human | Colorectum | AD | 2.78e-12 | 5.43e-01 | -0.1954 |
| 7464 | CORO2A | HTA11_83_2000001011 | Human | Colorectum | SER | 2.48e-08 | 8.23e-01 | -0.1526 |
| 7464 | CORO2A | HTA11_696_2000001011 | Human | Colorectum | AD | 1.07e-11 | 6.13e-01 | -0.1464 |
| 7464 | CORO2A | HTA11_1391_2000001011 | Human | Colorectum | AD | 9.26e-05 | 5.62e-01 | -0.059 |
| 7464 | CORO2A | A015-C-203 | Human | Colorectum | FAP | 7.08e-07 | -2.28e-01 | -0.1294 |
| 7464 | CORO2A | A002-C-201 | Human | Colorectum | FAP | 1.11e-03 | -1.82e-01 | 0.0324 |
| 7464 | CORO2A | A001-C-119 | Human | Colorectum | FAP | 1.41e-03 | -2.31e-01 | -0.1557 |
| 7464 | CORO2A | A001-C-108 | Human | Colorectum | FAP | 4.58e-04 | -2.07e-01 | -0.0272 |
| 7464 | CORO2A | A002-C-205 | Human | Colorectum | FAP | 1.11e-07 | -2.43e-01 | -0.1236 |
| 7464 | CORO2A | A015-C-005 | Human | Colorectum | FAP | 9.00e-03 | -2.15e-01 | -0.0336 |
| 7464 | CORO2A | A015-C-006 | Human | Colorectum | FAP | 1.66e-04 | -2.15e-01 | -0.0994 |
| 7464 | CORO2A | A015-C-106 | Human | Colorectum | FAP | 5.56e-03 | -2.38e-01 | -0.0511 |
| 7464 | CORO2A | A002-C-114 | Human | Colorectum | FAP | 9.64e-05 | -1.94e-01 | -0.1561 |
| 7464 | CORO2A | A015-C-104 | Human | Colorectum | FAP | 1.58e-07 | -2.21e-01 | -0.1899 |
| 7464 | CORO2A | A001-C-014 | Human | Colorectum | FAP | 1.66e-02 | -1.49e-01 | 0.0135 |
| 7464 | CORO2A | A002-C-016 | Human | Colorectum | FAP | 1.50e-07 | -2.36e-01 | 0.0521 |
| 7464 | CORO2A | A015-C-002 | Human | Colorectum | FAP | 3.11e-04 | -2.68e-01 | -0.0763 |
| Page: 1 2 3 4 5 6 |
| Transcriptomic changes along malignancy continuum. |
| Tissue | Expression Dynamics | Abbreviation |
| Cervix |  | CC: Cervix cancer |
| HSIL_HPV: HPV-infected high-grade squamous intraepithelial lesions | ||
| N_HPV: HPV-infected normal cervix | ||
| Colorectum (GSE201348) |  | FAP: Familial adenomatous polyposis |
| CRC: Colorectal cancer | ||
| Colorectum (HTA11) |  | AD: Adenomas |
| SER: Sessile serrated lesions | ||
| MSI-H: Microsatellite-high colorectal cancer | ||
| MSS: Microsatellite stable colorectal cancer | ||
| Esophagus |  | ESCC: Esophageal squamous cell carcinoma |
| HGIN: High-grade intraepithelial neoplasias | ||
| LGIN: Low-grade intraepithelial neoplasias | ||
| Liver |  | HCC: Hepatocellular carcinoma |
| NAFLD: Non-alcoholic fatty liver disease | ||
| Oral Cavity |  | EOLP: Erosive Oral lichen planus |
| LP: leukoplakia | ||
| NEOLP: Non-erosive oral lichen planus | ||
| OSCC: Oral squamous cell carcinoma |
| ∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
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Malignant transformation related pathway analysis |
| Find out the enriched GO biological processes and KEGG pathways involved in transition from healthy to precancer to cancer |
| Figure of enriched GO biological processes. |
| Tissue | Disease Stage | Enriched GO biological Processes |
| Colorectum | AD |  |
| Colorectum | SER |  |
| Colorectum | MSS |  |
| Colorectum | MSI-H |  |
| Colorectum | FAP |  |
| ∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
| Page: 1 2 3 4 5 6 7 8 9 |
| Enriched GO biological processes. |
| GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
| Page: 1 |
| Enriched KEGG pathways. |
| Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
| Page: 1 |
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Cell-cell communication analysis |
| Identification of potential cell-cell interactions between two cell types and their ligand-receptor pairs for different disease states |
| Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
| Page: 1 |
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Single-cell gene regulatory network inference analysis |
| Find out the significant the regulons (TFs) and the target genes of each regulon across cell types for different disease states |
| TF | Cell Type | Tissue | Disease Stage | Target Gene | RSS | Regulon Activity |
| ∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
| Page: 1 |
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Somatic mutation of malignant transformation related genes |
| Annotation of somatic variants for genes involved in malignant transformation |
| Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
| CORO2A | SNV | Missense_Mutation | c.1367N>C | p.His456Pro | p.H456P | Q92828 | protein_coding | tolerated(0.23) | benign(0) | TCGA-A2-A1G1-01 | Breast | breast invasive carcinoma | Female | >=65 | I/II | Unknown | Unknown | SD | |
| CORO2A | SNV | Missense_Mutation | c.541N>C | p.Asp181His | p.D181H | Q92828 | protein_coding | deleterious(0) | probably_damaging(0.995) | TCGA-AN-A0FL-01 | Breast | breast invasive carcinoma | Female | <65 | I/II | Unknown | Unknown | SD | |
| CORO2A | SNV | Missense_Mutation | c.236G>T | p.Cys79Phe | p.C79F | Q92828 | protein_coding | deleterious(0.01) | probably_damaging(0.962) | TCGA-BH-A0B7-01 | Breast | breast invasive carcinoma | Female | <65 | I/II | Chemotherapy | adriamycin | CR | |
| CORO2A | SNV | Missense_Mutation | c.245N>A | p.Arg82Lys | p.R82K | Q92828 | protein_coding | tolerated(1) | benign(0.013) | TCGA-BH-A0BA-01 | Breast | breast invasive carcinoma | Female | <65 | III/IV | Chemotherapy | cytoxan | SD | |
| CORO2A | SNV | Missense_Mutation | c.1516N>A | p.Val506Ile | p.V506I | Q92828 | protein_coding | tolerated(0.4) | benign(0.134) | TCGA-E2-A14Q-01 | Breast | breast invasive carcinoma | Female | <65 | I/II | Hormone Therapy | tamoxiphen | SD | |
| CORO2A | SNV | Missense_Mutation | c.1096G>A | p.Glu366Lys | p.E366K | Q92828 | protein_coding | deleterious(0) | probably_damaging(0.924) | TCGA-E2-A159-01 | Breast | breast invasive carcinoma | Female | <65 | I/II | Chemotherapy | cyclophosphamide | SD | |
| CORO2A | SNV | Missense_Mutation | novel | c.722G>A | p.Gly241Asp | p.G241D | Q92828 | protein_coding | deleterious(0) | probably_damaging(0.997) | TCGA-LL-A9Q3-01 | Breast | breast invasive carcinoma | Female | >=65 | III/IV | Immunotherapy | herceptin | CR |
| CORO2A | insertion | Frame_Shift_Ins | novel | c.664_665insCTAGAGGAGGGGAGGTAGCT | p.Gly222AlafsTer20 | p.G222Afs*20 | Q92828 | protein_coding | TCGA-BH-A0BA-01 | Breast | breast invasive carcinoma | Female | <65 | III/IV | Chemotherapy | cytoxan | SD | ||
| CORO2A | SNV | Missense_Mutation | novel | c.781N>T | p.Pro261Ser | p.P261S | Q92828 | protein_coding | deleterious(0.02) | probably_damaging(0.913) | TCGA-2W-A8YY-01 | Cervix | cervical & endocervical cancer | Female | <65 | I/II | Chemotherapy | cisplatin | CR |
| CORO2A | SNV | Missense_Mutation | novel | c.1358N>A | p.Ala453Glu | p.A453E | Q92828 | protein_coding | tolerated(0.63) | benign(0.024) | TCGA-C5-A8YR-01 | Cervix | cervical & endocervical cancer | Female | <65 | I/II | Unknown | Unknown | PD |
| Page: 1 2 3 4 5 6 |
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Related drugs of malignant transformation related genes |
| Identification of chemicals and drugs interact with genes involved in malignant transfromation |
| (DGIdb 4.0) |
| Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
| Page: 1 |
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