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Gene: CCAT1 |
Gene summary for CCAT1 |
 Gene summary. |
| Gene information | Species | Human | Gene symbol | CCAT1 | Gene ID | 100507056 |
| Gene name | colon cancer associated transcript 1 | |
| Gene Alias | CARLO5 | |
| Cytomap | 8q24.21 | |
| Gene Type | ncRNA | GO ID | NA | UniProtAcc | NA |
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Malignant transformation analysis |
| Identification of the aberrant gene expression in precancerous and cancerous lesions by comparing the gene expression of stem-like cells in diseased tissues with normal stem cells |
| Malignant transformation involving gene list. |
| Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
| 100507056 | CCAT1 | P4T-E | Human | Esophagus | ESCC | 3.23e-21 | 7.24e-01 | 0.1323 |
| 100507056 | CCAT1 | P9T-E | Human | Esophagus | ESCC | 2.16e-08 | 4.42e-01 | 0.1131 |
| 100507056 | CCAT1 | P22T-E | Human | Esophagus | ESCC | 8.40e-04 | 1.74e-01 | 0.1236 |
| 100507056 | CCAT1 | P26T-E | Human | Esophagus | ESCC | 5.87e-84 | 2.36e+00 | 0.1276 |
| 100507056 | CCAT1 | P27T-E | Human | Esophagus | ESCC | 1.62e-13 | 4.07e-01 | 0.1055 |
| 100507056 | CCAT1 | P28T-E | Human | Esophagus | ESCC | 4.16e-22 | 7.08e-01 | 0.1149 |
| 100507056 | CCAT1 | P30T-E | Human | Esophagus | ESCC | 6.22e-16 | 1.24e+00 | 0.137 |
| 100507056 | CCAT1 | P39T-E | Human | Esophagus | ESCC | 7.90e-19 | 6.77e-01 | 0.0894 |
| 100507056 | CCAT1 | P52T-E | Human | Esophagus | ESCC | 1.46e-28 | 1.08e+00 | 0.1555 |
| 100507056 | CCAT1 | P54T-E | Human | Esophagus | ESCC | 3.11e-05 | 2.51e-01 | 0.0975 |
| 100507056 | CCAT1 | P62T-E | Human | Esophagus | ESCC | 4.84e-13 | 4.45e-01 | 0.1302 |
| 100507056 | CCAT1 | P74T-E | Human | Esophagus | ESCC | 5.81e-29 | 1.28e+00 | 0.1479 |
| 100507056 | CCAT1 | P75T-E | Human | Esophagus | ESCC | 2.56e-16 | 6.17e-01 | 0.1125 |
| 100507056 | CCAT1 | P83T-E | Human | Esophagus | ESCC | 1.22e-32 | 1.17e+00 | 0.1738 |
| 100507056 | CCAT1 | P89T-E | Human | Esophagus | ESCC | 7.93e-16 | 9.19e-01 | 0.1752 |
| 100507056 | CCAT1 | P127T-E | Human | Esophagus | ESCC | 1.81e-05 | 2.48e-01 | 0.0826 |
| 100507056 | CCAT1 | P130T-E | Human | Esophagus | ESCC | 3.37e-05 | 1.91e-01 | 0.1676 |
| Page: 1 |
| Transcriptomic changes along malignancy continuum. |
| Tissue | Expression Dynamics | Abbreviation |
| Esophagus |  | ESCC: Esophageal squamous cell carcinoma |
| HGIN: High-grade intraepithelial neoplasias | ||
| LGIN: Low-grade intraepithelial neoplasias |
| ∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
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Malignant transformation related pathway analysis |
| Find out the enriched GO biological processes and KEGG pathways involved in transition from healthy to precancer to cancer |
| Figure of enriched GO biological processes. |
| Tissue | Disease Stage | Enriched GO biological Processes |
| Colorectum | AD |  |
| Colorectum | SER |  |
| Colorectum | MSS |  |
| Colorectum | MSI-H |  |
| Colorectum | FAP |  |
| ∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
| Page: 1 2 3 4 5 6 7 8 9 |
| Enriched GO biological processes. |
| GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
| Page: 1 |
| Enriched KEGG pathways. |
| Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
| Page: 1 |
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Cell-cell communication analysis |
| Identification of potential cell-cell interactions between two cell types and their ligand-receptor pairs for different disease states |
| Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
| Page: 1 |
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Single-cell gene regulatory network inference analysis |
| Find out the significant the regulons (TFs) and the target genes of each regulon across cell types for different disease states |
| TF | Cell Type | Tissue | Disease Stage | Target Gene | RSS | Regulon Activity |
| ∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
| Page: 1 |
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Somatic mutation of malignant transformation related genes |
| Annotation of somatic variants for genes involved in malignant transformation |
| Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
| Page: 1 |
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Related drugs of malignant transformation related genes |
| Identification of chemicals and drugs interact with genes involved in malignant transfromation |
| (DGIdb 4.0) |
| Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
| Page: 1 |
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