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Gene: AXL |
Gene summary for AXL |
 Gene summary. |
| Gene information | Species | Human | Gene symbol | AXL | Gene ID | 558 |
| Gene name | AXL receptor tyrosine kinase | |
| Gene Alias | ARK | |
| Cytomap | 19q13.2 | |
| Gene Type | protein-coding | GO ID | GO:0000003 | UniProtAcc | M0R0W6 |
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Malignant transformation analysis |
| Identification of the aberrant gene expression in precancerous and cancerous lesions by comparing the gene expression of stem-like cells in diseased tissues with normal stem cells |
| Malignant transformation involving gene list. |
| Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
| 558 | AXL | LZE6T | Human | Esophagus | ESCC | 4.24e-02 | 2.95e-01 | 0.0845 |
| 558 | AXL | P2T-E | Human | Esophagus | ESCC | 3.40e-13 | 9.01e-02 | 0.1177 |
| 558 | AXL | P8T-E | Human | Esophagus | ESCC | 1.16e-06 | 1.49e-01 | 0.0889 |
| 558 | AXL | P11T-E | Human | Esophagus | ESCC | 2.83e-05 | 3.59e-01 | 0.1426 |
| 558 | AXL | P12T-E | Human | Esophagus | ESCC | 2.46e-10 | 1.62e-01 | 0.1122 |
| 558 | AXL | P17T-E | Human | Esophagus | ESCC | 9.69e-03 | 2.99e-01 | 0.1278 |
| 558 | AXL | P21T-E | Human | Esophagus | ESCC | 5.53e-08 | 1.06e-01 | 0.1617 |
| 558 | AXL | P24T-E | Human | Esophagus | ESCC | 6.45e-05 | 1.35e-01 | 0.1287 |
| 558 | AXL | P26T-E | Human | Esophagus | ESCC | 5.47e-11 | 1.96e-01 | 0.1276 |
| 558 | AXL | P31T-E | Human | Esophagus | ESCC | 5.43e-04 | 4.54e-02 | 0.1251 |
| 558 | AXL | P32T-E | Human | Esophagus | ESCC | 4.84e-12 | 2.87e-01 | 0.1666 |
| 558 | AXL | P37T-E | Human | Esophagus | ESCC | 9.46e-17 | 3.86e-01 | 0.1371 |
| 558 | AXL | P44T-E | Human | Esophagus | ESCC | 1.70e-10 | 3.28e-01 | 0.1096 |
| 558 | AXL | P61T-E | Human | Esophagus | ESCC | 2.13e-08 | 2.14e-01 | 0.099 |
| 558 | AXL | P74T-E | Human | Esophagus | ESCC | 9.96e-04 | 1.40e-01 | 0.1479 |
| 558 | AXL | P76T-E | Human | Esophagus | ESCC | 7.70e-10 | 2.32e-01 | 0.1207 |
| 558 | AXL | P79T-E | Human | Esophagus | ESCC | 8.26e-10 | 1.98e-01 | 0.1154 |
| 558 | AXL | P82T-E | Human | Esophagus | ESCC | 1.70e-03 | 5.62e-01 | 0.1072 |
| 558 | AXL | P83T-E | Human | Esophagus | ESCC | 5.44e-04 | 2.12e-01 | 0.1738 |
| 558 | AXL | P130T-E | Human | Esophagus | ESCC | 8.78e-22 | 5.29e-01 | 0.1676 |
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| Transcriptomic changes along malignancy continuum. |
| Tissue | Expression Dynamics | Abbreviation |
| Esophagus |  | ESCC: Esophageal squamous cell carcinoma |
| HGIN: High-grade intraepithelial neoplasias | ||
| LGIN: Low-grade intraepithelial neoplasias | ||
| Oral Cavity |  | EOLP: Erosive Oral lichen planus |
| LP: leukoplakia | ||
| NEOLP: Non-erosive oral lichen planus | ||
| OSCC: Oral squamous cell carcinoma | ||
| Prostate |  | BPH: Benign Prostatic Hyperplasia |
| Thyroid |  | ATC: Anaplastic thyroid cancer |
| HT: Hashimoto's thyroiditis | ||
| PTC: Papillary thyroid cancer |
| ∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
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Malignant transformation related pathway analysis |
| Find out the enriched GO biological processes and KEGG pathways involved in transition from healthy to precancer to cancer |
| Figure of enriched GO biological processes. |
| Tissue | Disease Stage | Enriched GO biological Processes |
| Colorectum | AD |  |
| Colorectum | SER |  |
| Colorectum | MSS |  |
| Colorectum | MSI-H |  |
| Colorectum | FAP |  |
| ∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
| Page: 1 2 3 4 5 6 7 8 9 |
| Enriched GO biological processes. |
| GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
| GO:0016032111 | Esophagus | ESCC | viral process | 301/8552 | 415/18723 | 3.34e-29 | 1.32e-26 | 301 |
| GO:0006979111 | Esophagus | ESCC | response to oxidative stress | 303/8552 | 446/18723 | 7.15e-22 | 1.30e-19 | 303 |
| GO:0019058111 | Esophagus | ESCC | viral life cycle | 226/8552 | 317/18723 | 1.17e-20 | 1.76e-18 | 226 |
| GO:0062197111 | Esophagus | ESCC | cellular response to chemical stress | 234/8552 | 337/18723 | 5.37e-19 | 5.97e-17 | 234 |
| GO:0034599111 | Esophagus | ESCC | cellular response to oxidative stress | 197/8552 | 288/18723 | 3.76e-15 | 2.15e-13 | 197 |
| GO:0071496111 | Esophagus | ESCC | cellular response to external stimulus | 215/8552 | 320/18723 | 4.29e-15 | 2.43e-13 | 215 |
| GO:0031668111 | Esophagus | ESCC | cellular response to extracellular stimulus | 168/8552 | 246/18723 | 4.93e-13 | 2.23e-11 | 168 |
| GO:0050792111 | Esophagus | ESCC | regulation of viral process | 119/8552 | 164/18723 | 2.19e-12 | 9.03e-11 | 119 |
| GO:0000302111 | Esophagus | ESCC | response to reactive oxygen species | 150/8552 | 222/18723 | 3.06e-11 | 1.02e-09 | 150 |
| GO:1903900111 | Esophagus | ESCC | regulation of viral life cycle | 106/8552 | 148/18723 | 1.26e-10 | 3.72e-09 | 106 |
| GO:0044403111 | Esophagus | ESCC | biological process involved in symbiotic interaction | 186/8552 | 290/18723 | 1.43e-10 | 4.16e-09 | 186 |
| GO:0051701111 | Esophagus | ESCC | biological process involved in interaction with host | 135/8552 | 203/18723 | 1.49e-09 | 3.49e-08 | 135 |
| GO:0042542111 | Esophagus | ESCC | response to hydrogen peroxide | 102/8552 | 146/18723 | 2.64e-09 | 5.81e-08 | 102 |
| GO:003158919 | Esophagus | ESCC | cell-substrate adhesion | 221/8552 | 363/18723 | 3.06e-09 | 6.62e-08 | 221 |
| GO:0052126111 | Esophagus | ESCC | movement in host environment | 117/8552 | 175/18723 | 1.14e-08 | 2.26e-07 | 117 |
| GO:0048524110 | Esophagus | ESCC | positive regulation of viral process | 52/8552 | 65/18723 | 1.41e-08 | 2.77e-07 | 52 |
| GO:0070997111 | Esophagus | ESCC | neuron death | 216/8552 | 361/18723 | 3.49e-08 | 6.45e-07 | 216 |
| GO:003010018 | Esophagus | ESCC | regulation of endocytosis | 135/8552 | 211/18723 | 5.75e-08 | 1.02e-06 | 135 |
| GO:003461420 | Esophagus | ESCC | cellular response to reactive oxygen species | 103/8552 | 155/18723 | 1.34e-07 | 2.17e-06 | 103 |
| GO:0002262111 | Esophagus | ESCC | myeloid cell homeostasis | 104/8552 | 157/18723 | 1.49e-07 | 2.36e-06 | 104 |
| Page: 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 |
| Enriched KEGG pathways. |
| Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
| hsa0152110 | Esophagus | ESCC | EGFR tyrosine kinase inhibitor resistance | 55/4205 | 79/8465 | 2.44e-04 | 8.78e-04 | 4.50e-04 | 55 |
| hsa0152115 | Esophagus | ESCC | EGFR tyrosine kinase inhibitor resistance | 55/4205 | 79/8465 | 2.44e-04 | 8.78e-04 | 4.50e-04 | 55 |
| hsa015219 | Oral cavity | OSCC | EGFR tyrosine kinase inhibitor resistance | 54/3704 | 79/8465 | 8.11e-06 | 3.72e-05 | 1.89e-05 | 54 |
| hsa0152114 | Oral cavity | OSCC | EGFR tyrosine kinase inhibitor resistance | 54/3704 | 79/8465 | 8.11e-06 | 3.72e-05 | 1.89e-05 | 54 |
| hsa0152142 | Oral cavity | NEOLP | EGFR tyrosine kinase inhibitor resistance | 20/1112 | 79/8465 | 2.47e-03 | 1.03e-02 | 6.49e-03 | 20 |
| hsa0152152 | Oral cavity | NEOLP | EGFR tyrosine kinase inhibitor resistance | 20/1112 | 79/8465 | 2.47e-03 | 1.03e-02 | 6.49e-03 | 20 |
| hsa015218 | Prostate | BPH | EGFR tyrosine kinase inhibitor resistance | 30/1718 | 79/8465 | 2.10e-04 | 1.13e-03 | 6.98e-04 | 30 |
| hsa0152113 | Prostate | BPH | EGFR tyrosine kinase inhibitor resistance | 30/1718 | 79/8465 | 2.10e-04 | 1.13e-03 | 6.98e-04 | 30 |
| Page: 1 |
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Cell-cell communication analysis |
| Identification of potential cell-cell interactions between two cell types and their ligand-receptor pairs for different disease states |
| Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
| GAS6 | AXL | GAS6_AXL | GAS | Breast | ADJ |
| PROS1 | AXL | PROS1_AXL | PROS | Breast | ADJ |
| GAS6 | AXL | GAS6_AXL | GAS | Breast | DCIS |
| PROS1 | AXL | PROS1_AXL | PROS | Breast | DCIS |
| GAS6 | AXL | GAS6_AXL | GAS | Breast | Healthy |
| PROS1 | AXL | PROS1_AXL | PROS | Breast | Healthy |
| GAS6 | AXL | GAS6_AXL | GAS | Breast | IDC |
| GAS6 | AXL | GAS6_AXL | GAS | Breast | Precancer |
| GAS6 | AXL | GAS6_AXL | GAS | Cervix | ADJ |
| PROS1 | AXL | PROS1_AXL | PROS | Cervix | ADJ |
| GAS6 | AXL | GAS6_AXL | GAS | Cervix | CC |
| PROS1 | AXL | PROS1_AXL | PROS | Cervix | CC |
| GAS6 | AXL | GAS6_AXL | GAS | Cervix | Healthy |
| PROS1 | AXL | PROS1_AXL | PROS | Cervix | Healthy |
| GAS6 | AXL | GAS6_AXL | GAS | Cervix | Precancer |
| GAS6 | AXL | GAS6_AXL | GAS | CRC | AD |
| GAS6 | AXL | GAS6_AXL | GAS | CRC | ADJ |
| GAS6 | AXL | GAS6_AXL | GAS | CRC | CRC |
| GAS6 | AXL | GAS6_AXL | GAS | CRC | MSI-H |
| GAS6 | AXL | GAS6_AXL | GAS | CRC | MSS |
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Single-cell gene regulatory network inference analysis |
| Find out the significant the regulons (TFs) and the target genes of each regulon across cell types for different disease states |
| TF | Cell Type | Tissue | Disease Stage | Target Gene | RSS | Regulon Activity |
| ∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
| Page: 1 |
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Somatic mutation of malignant transformation related genes |
| Annotation of somatic variants for genes involved in malignant transformation |
| Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
| AXL | SNV | Missense_Mutation | rs144824336 | c.1498N>A | p.Val500Met | p.V500M | P30530 | protein_coding | deleterious(0) | possibly_damaging(0.835) | TCGA-A7-A4SE-01 | Breast | breast invasive carcinoma | Female | <65 | I/II | Chemotherapy | adriamycin | CR |
| AXL | SNV | Missense_Mutation | rs756510536 | c.1906N>T | p.Arg636Trp | p.R636W | P30530 | protein_coding | deleterious(0.02) | benign(0.098) | TCGA-AC-A8OQ-01 | Breast | breast invasive carcinoma | Female | >=65 | I/II | Unknown | Unknown | SD |
| AXL | SNV | Missense_Mutation | novel | c.1100N>G | p.Tyr367Cys | p.Y367C | P30530 | protein_coding | deleterious(0) | probably_damaging(0.978) | TCGA-AN-A0AK-01 | Breast | breast invasive carcinoma | Female | >=65 | I/II | Unknown | Unknown | SD |
| AXL | SNV | Missense_Mutation | rs374699228 | c.818N>T | p.Ala273Val | p.A273V | P30530 | protein_coding | tolerated(0.27) | benign(0.005) | TCGA-AR-A0U2-01 | Breast | breast invasive carcinoma | Female | <65 | III/IV | Hormone Therapy | tamoxiphen | PD |
| AXL | SNV | Missense_Mutation | rs751738506 | c.883N>T | p.Arg295Trp | p.R295W | P30530 | protein_coding | tolerated(0.17) | possibly_damaging(0.88) | TCGA-D8-A27R-01 | Breast | breast invasive carcinoma | Female | <65 | III/IV | Chemotherapy | adriamycin+cyclophosphamide | SD |
| AXL | SNV | Missense_Mutation | c.598A>G | p.Thr200Ala | p.T200A | P30530 | protein_coding | tolerated(0.13) | benign(0.054) | TCGA-E9-A22E-01 | Breast | breast invasive carcinoma | Female | <65 | III/IV | Chemotherapy | cyclophosphane | SD | |
| AXL | insertion | Frame_Shift_Ins | rs778012871 | c.867_868insC | p.His292ProfsTer47 | p.H292Pfs*47 | P30530 | protein_coding | TCGA-BH-A1FD-01 | Breast | breast invasive carcinoma | Female | >=65 | I/II | Unknown | Unknown | PD | ||
| AXL | insertion | Frame_Shift_Ins | rs778012871 | c.867_868insC | p.His292ProfsTer47 | p.H292Pfs*47 | P30530 | protein_coding | TCGA-E9-A1NI-01 | Breast | breast invasive carcinoma | Female | <65 | I/II | Chemotherapy | doxorubicin | CR | ||
| AXL | SNV | Missense_Mutation | novel | c.226N>A | p.Leu76Met | p.L76M | P30530 | protein_coding | deleterious(0.02) | possibly_damaging(0.744) | TCGA-DS-A1OB-01 | Cervix | cervical & endocervical cancer | Female | <65 | I/II | Chemotherapy | carboplatin | PD |
| AXL | SNV | Missense_Mutation | c.1279N>T | p.Arg427Cys | p.R427C | P30530 | protein_coding | tolerated(0.06) | possibly_damaging(0.66) | TCGA-FU-A3HZ-01 | Cervix | cervical & endocervical cancer | Female | <65 | I/II | Chemotherapy | cisplatin | CR |
| Page: 1 2 3 4 5 6 7 8 9 10 11 12 |
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Related drugs of malignant transformation related genes |
| Identification of chemicals and drugs interact with genes involved in malignant transfromation |
| (DGIdb 4.0) |
| Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
| 558 | AXL | CLINICALLY ACTIONABLE, DRUGGABLE GENOME, ENZYME, KINASE, TYROSINE KINASE, CELL SURFACE | DASATINIB | DASATINIB | ||
| 558 | AXL | CLINICALLY ACTIONABLE, DRUGGABLE GENOME, ENZYME, KINASE, TYROSINE KINASE, CELL SURFACE | PF-562271 | PF-00562271 | ||
| 558 | AXL | CLINICALLY ACTIONABLE, DRUGGABLE GENOME, ENZYME, KINASE, TYROSINE KINASE, CELL SURFACE | inhibitor | 363894214 | SITRAVATINIB | |
| 558 | AXL | CLINICALLY ACTIONABLE, DRUGGABLE GENOME, ENZYME, KINASE, TYROSINE KINASE, CELL SURFACE | inhibitor | 404859021 | ||
| 558 | AXL | CLINICALLY ACTIONABLE, DRUGGABLE GENOME, ENZYME, KINASE, TYROSINE KINASE, CELL SURFACE | inhibitor | HESPERADIN | HESPERADIN | 19035792 |
| 558 | AXL | CLINICALLY ACTIONABLE, DRUGGABLE GENOME, ENZYME, KINASE, TYROSINE KINASE, CELL SURFACE | inhibitor | 363894135 | MERESTINIB | |
| 558 | AXL | CLINICALLY ACTIONABLE, DRUGGABLE GENOME, ENZYME, KINASE, TYROSINE KINASE, CELL SURFACE | XL999 | |||
| 558 | AXL | CLINICALLY ACTIONABLE, DRUGGABLE GENOME, ENZYME, KINASE, TYROSINE KINASE, CELL SURFACE | Gilteritinib | GILTERITINIB | ||
| 558 | AXL | CLINICALLY ACTIONABLE, DRUGGABLE GENOME, ENZYME, KINASE, TYROSINE KINASE, CELL SURFACE | inhibitor | 252827520 | DUBERMATINIB | |
| 558 | AXL | CLINICALLY ACTIONABLE, DRUGGABLE GENOME, ENZYME, KINASE, TYROSINE KINASE, CELL SURFACE | BI-505 | BI-505 |
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