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Gene: ATP2C2-AS1 |
Gene summary for ATP2C2-AS1 |
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Gene information | Species | Human | Gene symbol | ATP2C2-AS1 | Gene ID | 105371374 |
Gene name | ATP2C2 antisense RNA 1 | |
Gene Alias | ATP2C2-AS1 | |
Cytomap | 16q24.1 | |
Gene Type | ncRNA | GO ID | NA | UniProtAcc | NA |
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Malignant transformation analysis |
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Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
105371374 | ATP2C2-AS1 | HTA11_347_2000001011 | Human | Colorectum | AD | 1.58e-21 | 4.30e-01 | -0.1954 |
105371374 | ATP2C2-AS1 | HTA11_2112_2000001011 | Human | Colorectum | SER | 1.46e-04 | 5.00e-01 | -0.2196 |
105371374 | ATP2C2-AS1 | HTA11_696_2000001011 | Human | Colorectum | AD | 6.36e-13 | 3.58e-01 | -0.1464 |
105371374 | ATP2C2-AS1 | HTA11_866_2000001011 | Human | Colorectum | AD | 6.34e-10 | 2.44e-01 | -0.1001 |
105371374 | ATP2C2-AS1 | HTA11_2992_2000001011 | Human | Colorectum | SER | 2.68e-02 | 3.45e-01 | -0.1706 |
105371374 | ATP2C2-AS1 | HTA11_7862_2000001011 | Human | Colorectum | AD | 4.39e-06 | 3.22e-01 | -0.0179 |
105371374 | ATP2C2-AS1 | HTA11_8622_2000001021 | Human | Colorectum | SER | 3.42e-06 | 4.41e-01 | 0.0528 |
105371374 | ATP2C2-AS1 | HTA11_10623_2000001011 | Human | Colorectum | AD | 2.21e-03 | 2.66e-01 | -0.0177 |
105371374 | ATP2C2-AS1 | HTA11_7696_3000711011 | Human | Colorectum | AD | 1.18e-07 | 2.11e-01 | 0.0674 |
105371374 | ATP2C2-AS1 | HTA11_11156_2000001011 | Human | Colorectum | AD | 6.19e-04 | 6.00e-01 | 0.0397 |
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∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
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Malignant transformation related pathway analysis |
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Tissue | Disease Stage | Enriched GO biological Processes |
Colorectum | AD | ![]() |
Colorectum | SER | ![]() |
Colorectum | MSS | ![]() |
Colorectum | MSI-H | ![]() |
Colorectum | FAP | ![]() |
∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
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GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
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Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
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Cell-cell communication analysis |
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Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
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Single-cell gene regulatory network inference analysis |
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TF | Cell Type | Tissue | Disease Stage | Target Gene | RSS | Regulon Activity |
∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
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Somatic mutation of malignant transformation related genes |
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Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
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Related drugs of malignant transformation related genes |
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(DGIdb 4.0) |
Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
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