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Gene: ATP2B1-AS1 |
Gene summary for ATP2B1-AS1 |
 Gene summary. |
| Gene information | Species | Human | Gene symbol | ATP2B1-AS1 | Gene ID | 338758 |
| Gene name | ATP2B1 antisense RNA 1 | |
| Gene Alias | LINC00936 | |
| Cytomap | 12q21.33 | |
| Gene Type | ncRNA | GO ID | NA | UniProtAcc | NA |
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Malignant transformation analysis |
| Identification of the aberrant gene expression in precancerous and cancerous lesions by comparing the gene expression of stem-like cells in diseased tissues with normal stem cells |
| Malignant transformation involving gene list. |
| Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
| 338758 | ATP2B1-AS1 | PTC01 | Human | Thyroid | PTC | 1.21e-04 | 1.24e-01 | 0.1899 |
| 338758 | ATP2B1-AS1 | PTC04 | Human | Thyroid | PTC | 2.43e-03 | 8.20e-02 | 0.1927 |
| 338758 | ATP2B1-AS1 | PTC06 | Human | Thyroid | PTC | 2.26e-06 | 2.03e-01 | 0.2057 |
| 338758 | ATP2B1-AS1 | PTC07 | Human | Thyroid | PTC | 2.76e-08 | 1.79e-01 | 0.2044 |
| 338758 | ATP2B1-AS1 | ATC09 | Human | Thyroid | ATC | 2.78e-14 | 6.70e-01 | 0.2871 |
| 338758 | ATP2B1-AS1 | ATC12 | Human | Thyroid | ATC | 1.45e-16 | 3.36e-01 | 0.34 |
| 338758 | ATP2B1-AS1 | ATC1 | Human | Thyroid | ATC | 3.11e-15 | 7.52e-01 | 0.2878 |
| 338758 | ATP2B1-AS1 | ATC4 | Human | Thyroid | ATC | 5.41e-21 | 4.10e-01 | 0.34 |
| Page: 1 |
| Transcriptomic changes along malignancy continuum. |
| Tissue | Expression Dynamics | Abbreviation |
| Thyroid |  | ATC: Anaplastic thyroid cancer |
| HT: Hashimoto's thyroiditis | ||
| PTC: Papillary thyroid cancer |
| ∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
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Malignant transformation related pathway analysis |
| Find out the enriched GO biological processes and KEGG pathways involved in transition from healthy to precancer to cancer |
| Figure of enriched GO biological processes. |
| Tissue | Disease Stage | Enriched GO biological Processes |
| Colorectum | AD |  |
| Colorectum | SER |  |
| Colorectum | MSS |  |
| Colorectum | MSI-H |  |
| Colorectum | FAP |  |
| ∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
| Page: 1 2 3 4 5 6 7 8 9 |
| Enriched GO biological processes. |
| GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
| Page: 1 |
| Enriched KEGG pathways. |
| Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
| Page: 1 |
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Cell-cell communication analysis |
| Identification of potential cell-cell interactions between two cell types and their ligand-receptor pairs for different disease states |
| Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
| Page: 1 |
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Single-cell gene regulatory network inference analysis |
| Find out the significant the regulons (TFs) and the target genes of each regulon across cell types for different disease states |
| TF | Cell Type | Tissue | Disease Stage | Target Gene | RSS | Regulon Activity |
| ∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
| Page: 1 |
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Somatic mutation of malignant transformation related genes |
| Annotation of somatic variants for genes involved in malignant transformation |
| Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
| Page: 1 |
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Related drugs of malignant transformation related genes |
| Identification of chemicals and drugs interact with genes involved in malignant transfromation |
| (DGIdb 4.0) |
| Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
| Page: 1 |
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