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Gene: RALGDS |
Gene summary for RALGDS |
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Gene information | Species | Human | Gene symbol | RALGDS | Gene ID | 5900 |
Gene name | ral guanine nucleotide dissociation stimulator | |
Gene Alias | RGDS | |
Cytomap | 9q34.13-q34.2 | |
Gene Type | protein-coding | GO ID | GO:0007154 | UniProtAcc | Q12967 |
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Malignant transformation analysis |
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Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
5900 | RALGDS | HTA11_2487_2000001011 | Human | Colorectum | SER | 6.37e-04 | 2.42e-01 | -0.1808 |
5900 | RALGDS | HTA11_347_2000001011 | Human | Colorectum | AD | 2.67e-10 | 3.76e-01 | -0.1954 |
5900 | RALGDS | HTA11_696_2000001011 | Human | Colorectum | AD | 1.15e-05 | 3.39e-01 | -0.1464 |
5900 | RALGDS | HTA11_866_2000001011 | Human | Colorectum | AD | 1.09e-03 | 2.20e-01 | -0.1001 |
5900 | RALGDS | HTA11_1391_2000001011 | Human | Colorectum | AD | 1.95e-10 | 4.52e-01 | -0.059 |
5900 | RALGDS | HTA11_866_3004761011 | Human | Colorectum | AD | 5.29e-06 | 3.88e-01 | 0.096 |
5900 | RALGDS | HTA11_7696_3000711011 | Human | Colorectum | AD | 8.20e-07 | 3.50e-01 | 0.0674 |
5900 | RALGDS | HTA11_6818_2000001021 | Human | Colorectum | AD | 7.15e-05 | 4.07e-01 | 0.0588 |
5900 | RALGDS | HTA11_99999970781_79442 | Human | Colorectum | MSS | 7.10e-13 | 4.56e-01 | 0.294 |
5900 | RALGDS | HTA11_99999965104_69814 | Human | Colorectum | MSS | 1.01e-04 | 4.07e-01 | 0.281 |
5900 | RALGDS | HTA11_99999971662_82457 | Human | Colorectum | MSS | 2.09e-22 | 7.31e-01 | 0.3859 |
5900 | RALGDS | HTA11_99999973899_84307 | Human | Colorectum | MSS | 2.69e-06 | 5.79e-01 | 0.2585 |
5900 | RALGDS | HTA11_99999974143_84620 | Human | Colorectum | MSS | 1.84e-12 | 3.67e-01 | 0.3005 |
5900 | RALGDS | A002-C-116 | Human | Colorectum | FAP | 8.13e-03 | -1.18e-01 | -0.0452 |
5900 | RALGDS | LZE4T | Human | Esophagus | ESCC | 1.13e-06 | -3.27e-02 | 0.0811 |
5900 | RALGDS | LZE7T | Human | Esophagus | ESCC | 9.34e-06 | 1.32e-01 | 0.0667 |
5900 | RALGDS | LZE8T | Human | Esophagus | ESCC | 3.85e-04 | 2.43e-01 | 0.067 |
5900 | RALGDS | LZE20T | Human | Esophagus | ESCC | 4.87e-07 | 3.08e-02 | 0.0662 |
5900 | RALGDS | LZE24T | Human | Esophagus | ESCC | 4.64e-07 | 2.80e-01 | 0.0596 |
5900 | RALGDS | LZE21T | Human | Esophagus | ESCC | 4.55e-04 | 2.80e-01 | 0.0655 |
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∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
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Malignant transformation related pathway analysis |
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Tissue | Disease Stage | Enriched GO biological Processes |
Colorectum | AD | ![]() |
Colorectum | SER | ![]() |
Colorectum | MSS | ![]() |
Colorectum | MSI-H | ![]() |
Colorectum | FAP | ![]() |
∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
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GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
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Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
hsa05210 | Colorectum | AD | Colorectal cancer | 35/2092 | 86/8465 | 7.54e-04 | 5.49e-03 | 3.50e-03 | 35 |
hsa04015 | Colorectum | AD | Rap1 signaling pathway | 71/2092 | 210/8465 | 1.72e-03 | 9.68e-03 | 6.18e-03 | 71 |
hsa05212 | Colorectum | AD | Pancreatic cancer | 29/2092 | 76/8465 | 6.25e-03 | 2.68e-02 | 1.71e-02 | 29 |
hsa052101 | Colorectum | AD | Colorectal cancer | 35/2092 | 86/8465 | 7.54e-04 | 5.49e-03 | 3.50e-03 | 35 |
hsa040151 | Colorectum | AD | Rap1 signaling pathway | 71/2092 | 210/8465 | 1.72e-03 | 9.68e-03 | 6.18e-03 | 71 |
hsa052121 | Colorectum | AD | Pancreatic cancer | 29/2092 | 76/8465 | 6.25e-03 | 2.68e-02 | 1.71e-02 | 29 |
hsa040152 | Colorectum | SER | Rap1 signaling pathway | 54/1580 | 210/8465 | 6.55e-03 | 3.68e-02 | 2.67e-02 | 54 |
hsa040153 | Colorectum | SER | Rap1 signaling pathway | 54/1580 | 210/8465 | 6.55e-03 | 3.68e-02 | 2.67e-02 | 54 |
hsa052102 | Colorectum | MSS | Colorectal cancer | 36/1875 | 86/8465 | 3.08e-05 | 3.22e-04 | 1.97e-04 | 36 |
hsa040154 | Colorectum | MSS | Rap1 signaling pathway | 66/1875 | 210/8465 | 1.03e-03 | 5.94e-03 | 3.64e-03 | 66 |
hsa05231 | Colorectum | MSS | Choline metabolism in cancer | 34/1875 | 98/8465 | 2.90e-03 | 1.39e-02 | 8.50e-03 | 34 |
hsa052122 | Colorectum | MSS | Pancreatic cancer | 26/1875 | 76/8465 | 1.04e-02 | 3.69e-02 | 2.26e-02 | 26 |
hsa052103 | Colorectum | MSS | Colorectal cancer | 36/1875 | 86/8465 | 3.08e-05 | 3.22e-04 | 1.97e-04 | 36 |
hsa040155 | Colorectum | MSS | Rap1 signaling pathway | 66/1875 | 210/8465 | 1.03e-03 | 5.94e-03 | 3.64e-03 | 66 |
hsa052311 | Colorectum | MSS | Choline metabolism in cancer | 34/1875 | 98/8465 | 2.90e-03 | 1.39e-02 | 8.50e-03 | 34 |
hsa052123 | Colorectum | MSS | Pancreatic cancer | 26/1875 | 76/8465 | 1.04e-02 | 3.69e-02 | 2.26e-02 | 26 |
hsa040156 | Colorectum | FAP | Rap1 signaling pathway | 53/1404 | 210/8465 | 7.93e-04 | 5.14e-03 | 3.13e-03 | 53 |
hsa040157 | Colorectum | FAP | Rap1 signaling pathway | 53/1404 | 210/8465 | 7.93e-04 | 5.14e-03 | 3.13e-03 | 53 |
hsa0521020 | Esophagus | ESCC | Colorectal cancer | 69/4205 | 86/8465 | 4.06e-09 | 4.13e-08 | 2.11e-08 | 69 |
hsa0521216 | Esophagus | ESCC | Pancreatic cancer | 62/4205 | 76/8465 | 7.37e-09 | 6.85e-08 | 3.51e-08 | 62 |
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Cell-cell communication analysis |
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Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
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Single-cell gene regulatory network inference analysis |
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TF | Cell Type | Tissue | Disease Stage | Target Gene | RSS | Regulon Activity |
∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
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Somatic mutation of malignant transformation related genes |
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Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
RALGDS | SNV | Missense_Mutation | rs777781200 | c.106N>A | p.Ala36Thr | p.A36T | Q12967 | protein_coding | tolerated_low_confidence(0.23) | benign(0.272) | TCGA-CG-4305-01 | Stomach | stomach adenocarcinoma | Male | >=65 | I/II | Chemotherapy | cisplatin | CR |
RALGDS | SNV | Missense_Mutation | rs374734282 | c.359C>T | p.Thr120Met | p.T120M | Q12967 | protein_coding | deleterious(0) | probably_damaging(0.966) | TCGA-CG-5721-01 | Stomach | stomach adenocarcinoma | Male | <65 | III/IV | Unknown | Unknown | SD |
RALGDS | SNV | Missense_Mutation | c.2407N>T | p.Arg803Cys | p.R803C | Q12967 | protein_coding | deleterious(0) | probably_damaging(1) | TCGA-CG-5726-01 | Stomach | stomach adenocarcinoma | Male | >=65 | I/II | Unknown | Unknown | SD | |
RALGDS | SNV | Missense_Mutation | rs776063928 | c.2648N>A | p.Arg883Gln | p.R883Q | Q12967 | protein_coding | deleterious(0) | possibly_damaging(0.838) | TCGA-R5-A7ZI-01 | Stomach | stomach adenocarcinoma | Female | <65 | III/IV | Unknown | Unknown | SD |
RALGDS | deletion | In_Frame_Del | rs781367443 | c.732_734delNNN | p.Leu245del | p.L245del | Q12967 | protein_coding | TCGA-HU-A4GT-01 | Stomach | stomach adenocarcinoma | Female | >=65 | I/II | Chemotherapy | copolang | SD | ||
RALGDS | deletion | Frame_Shift_Del | novel | c.487delN | p.Arg163GlyfsTer105 | p.R163Gfs*105 | Q12967 | protein_coding | TCGA-VQ-A8PP-01 | Stomach | stomach adenocarcinoma | Male | >=65 | III/IV | Chemotherapy | fluorouracil | PD | ||
RALGDS | SNV | Missense_Mutation | novel | c.1348G>T | p.Gly450Trp | p.G450W | Q12967 | protein_coding | deleterious(0) | probably_damaging(0.996) | TCGA-FY-A3BL-01 | Thyroid | thyroid carcinoma | Male | <65 | I/II | Unknown | Unknown | SD |
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Related drugs of malignant transformation related genes |
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(DGIdb 4.0) |
Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
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