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Gene: DMGDH |
Gene summary for DMGDH |
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Gene information | Species | Human | Gene symbol | DMGDH | Gene ID | 29958 |
Gene name | dimethylglycine dehydrogenase | |
Gene Alias | DMGDHD | |
Cytomap | 5q14.1 | |
Gene Type | protein-coding | GO ID | GO:0006091 | UniProtAcc | B3KQ84 |
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Malignant transformation analysis |
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Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
29958 | DMGDH | HTA11_2487_2000001011 | Human | Colorectum | SER | 2.49e-02 | 2.89e-01 | -0.1808 |
29958 | DMGDH | HTA11_1938_2000001011 | Human | Colorectum | AD | 8.75e-06 | 4.04e-01 | -0.0811 |
29958 | DMGDH | HTA11_347_2000001011 | Human | Colorectum | AD | 8.55e-13 | 5.32e-01 | -0.1954 |
29958 | DMGDH | HTA11_411_2000001011 | Human | Colorectum | SER | 6.45e-03 | 6.51e-01 | -0.2602 |
29958 | DMGDH | HTA11_696_2000001011 | Human | Colorectum | AD | 1.39e-09 | 4.86e-01 | -0.1464 |
29958 | DMGDH | HTA11_1391_2000001011 | Human | Colorectum | AD | 3.74e-05 | 3.56e-01 | -0.059 |
29958 | DMGDH | HTA11_10623_2000001011 | Human | Colorectum | AD | 6.51e-06 | 5.03e-01 | -0.0177 |
29958 | DMGDH | HTA11_10711_2000001011 | Human | Colorectum | AD | 4.51e-06 | 5.30e-01 | 0.0338 |
29958 | DMGDH | HTA11_7696_3000711011 | Human | Colorectum | AD | 7.71e-03 | 3.47e-01 | 0.0674 |
29958 | DMGDH | HTA11_6818_2000001011 | Human | Colorectum | AD | 3.19e-10 | 8.30e-01 | 0.0112 |
29958 | DMGDH | HTA11_11156_2000001011 | Human | Colorectum | AD | 2.21e-02 | 4.32e-01 | 0.0397 |
29958 | DMGDH | HTA11_6818_2000001021 | Human | Colorectum | AD | 1.23e-05 | 5.15e-01 | 0.0588 |
29958 | DMGDH | HTA11_99999973899_84307 | Human | Colorectum | MSS | 6.52e-07 | 6.14e-01 | 0.2585 |
29958 | DMGDH | HTA11_99999974143_84620 | Human | Colorectum | MSS | 7.28e-35 | 1.20e+00 | 0.3005 |
29958 | DMGDH | A002-C-116 | Human | Colorectum | FAP | 5.97e-03 | -4.27e-02 | -0.0452 |
29958 | DMGDH | NAFLD1 | Human | Liver | NAFLD | 4.54e-16 | 1.30e+00 | -0.04 |
29958 | DMGDH | S41 | Human | Liver | Cirrhotic | 2.95e-06 | 6.50e-01 | -0.0343 |
29958 | DMGDH | S43 | Human | Liver | Cirrhotic | 1.94e-06 | -8.96e-02 | -0.0187 |
29958 | DMGDH | HCC1_Meng | Human | Liver | HCC | 2.29e-36 | -1.64e-01 | 0.0246 |
29958 | DMGDH | HCC2_Meng | Human | Liver | HCC | 2.15e-06 | -2.09e-01 | 0.0107 |
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∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
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Malignant transformation related pathway analysis |
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Tissue | Disease Stage | Enriched GO biological Processes |
Colorectum | AD | ![]() |
Colorectum | SER | ![]() |
Colorectum | MSS | ![]() |
Colorectum | MSI-H | ![]() |
Colorectum | FAP | ![]() |
∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
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GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
GO:0006091 | Colorectum | AD | generation of precursor metabolites and energy | 209/3918 | 490/18723 | 3.17e-28 | 6.61e-25 | 209 |
GO:0022900 | Colorectum | AD | electron transport chain | 89/3918 | 175/18723 | 1.42e-18 | 8.91e-16 | 89 |
GO:0044270 | Colorectum | AD | cellular nitrogen compound catabolic process | 147/3918 | 451/18723 | 3.35e-09 | 2.23e-07 | 147 |
GO:0006575 | Colorectum | AD | cellular modified amino acid metabolic process | 59/3918 | 188/18723 | 4.80e-04 | 5.27e-03 | 59 |
GO:00060911 | Colorectum | SER | generation of precursor metabolites and energy | 168/2897 | 490/18723 | 1.39e-25 | 1.70e-22 | 168 |
GO:00229001 | Colorectum | SER | electron transport chain | 77/2897 | 175/18723 | 1.77e-19 | 1.36e-16 | 77 |
GO:00442701 | Colorectum | SER | cellular nitrogen compound catabolic process | 99/2897 | 451/18723 | 1.46e-04 | 2.86e-03 | 99 |
GO:00060912 | Colorectum | MSS | generation of precursor metabolites and energy | 186/3467 | 490/18723 | 1.14e-24 | 2.15e-21 | 186 |
GO:00229002 | Colorectum | MSS | electron transport chain | 83/3467 | 175/18723 | 2.06e-18 | 1.17e-15 | 83 |
GO:00442702 | Colorectum | MSS | cellular nitrogen compound catabolic process | 141/3467 | 451/18723 | 2.95e-11 | 3.83e-09 | 141 |
GO:00065751 | Colorectum | MSS | cellular modified amino acid metabolic process | 55/3467 | 188/18723 | 2.16e-04 | 3.01e-03 | 55 |
GO:00060914 | Colorectum | FAP | generation of precursor metabolites and energy | 128/2622 | 490/18723 | 5.58e-13 | 4.28e-10 | 128 |
GO:00229004 | Colorectum | FAP | electron transport chain | 51/2622 | 175/18723 | 1.44e-07 | 9.03e-06 | 51 |
GO:00442704 | Colorectum | FAP | cellular nitrogen compound catabolic process | 101/2622 | 451/18723 | 7.42e-07 | 3.44e-05 | 101 |
GO:00442707 | Liver | NAFLD | cellular nitrogen compound catabolic process | 93/1882 | 451/18723 | 1.04e-11 | 4.34e-09 | 93 |
GO:00060917 | Liver | NAFLD | generation of precursor metabolites and energy | 84/1882 | 490/18723 | 7.03e-07 | 3.95e-05 | 84 |
GO:0009310 | Liver | NAFLD | amine catabolic process | 9/1882 | 29/18723 | 1.59e-03 | 1.71e-02 | 9 |
GO:0042402 | Liver | NAFLD | cellular biogenic amine catabolic process | 8/1882 | 27/18723 | 3.97e-03 | 3.34e-02 | 8 |
GO:00065754 | Liver | NAFLD | cellular modified amino acid metabolic process | 31/1882 | 188/18723 | 3.98e-03 | 3.34e-02 | 31 |
GO:00229007 | Liver | NAFLD | electron transport chain | 29/1882 | 175/18723 | 4.87e-03 | 3.84e-02 | 29 |
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Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
hsa00260 | Liver | Cirrhotic | Glycine, serine and threonine metabolism | 22/2530 | 40/8465 | 7.85e-04 | 4.51e-03 | 2.78e-03 | 22 |
hsa002601 | Liver | Cirrhotic | Glycine, serine and threonine metabolism | 22/2530 | 40/8465 | 7.85e-04 | 4.51e-03 | 2.78e-03 | 22 |
hsa002602 | Liver | HCC | Glycine, serine and threonine metabolism | 28/4020 | 40/8465 | 3.28e-03 | 1.07e-02 | 5.93e-03 | 28 |
hsa002603 | Liver | HCC | Glycine, serine and threonine metabolism | 28/4020 | 40/8465 | 3.28e-03 | 1.07e-02 | 5.93e-03 | 28 |
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Cell-cell communication analysis |
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Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
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Single-cell gene regulatory network inference analysis |
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TF | Cell Type | Tissue | Disease Stage | Target Gene | RSS | Regulon Activity |
∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
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Somatic mutation of malignant transformation related genes |
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Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
DMGDH | SNV | Missense_Mutation | c.1817N>C | p.Trp606Ser | p.W606S | Q9UI17 | protein_coding | deleterious(0) | probably_damaging(0.987) | TCGA-05-4382-01 | Lung | lung adenocarcinoma | Male | >=65 | I/II | Unknown | Unknown | PD | |
DMGDH | SNV | Missense_Mutation | c.587N>G | p.Tyr196Cys | p.Y196C | Q9UI17 | protein_coding | deleterious(0.01) | probably_damaging(0.962) | TCGA-05-4382-01 | Lung | lung adenocarcinoma | Male | >=65 | I/II | Unknown | Unknown | PD | |
DMGDH | SNV | Missense_Mutation | c.1291C>A | p.Arg431Ser | p.R431S | Q9UI17 | protein_coding | deleterious(0.02) | probably_damaging(0.96) | TCGA-44-7669-01 | Lung | lung adenocarcinoma | Male | <65 | I/II | Chemotherapy | alimta | PD | |
DMGDH | SNV | Missense_Mutation | c.475A>G | p.Thr159Ala | p.T159A | Q9UI17 | protein_coding | tolerated(0.79) | benign(0.006) | TCGA-44-7669-01 | Lung | lung adenocarcinoma | Male | <65 | I/II | Chemotherapy | alimta | PD | |
DMGDH | SNV | Missense_Mutation | novel | c.1417N>T | p.Gly473Trp | p.G473W | Q9UI17 | protein_coding | deleterious(0.01) | probably_damaging(0.972) | TCGA-53-7626-01 | Lung | lung adenocarcinoma | Female | >=65 | I/II | Unspecific | Cisplatin | PD |
DMGDH | SNV | Missense_Mutation | c.2252C>T | p.Pro751Leu | p.P751L | Q9UI17 | protein_coding | deleterious(0.03) | benign(0.211) | TCGA-55-6969-01 | Lung | lung adenocarcinoma | Male | <65 | I/II | Unknown | Unknown | SD | |
DMGDH | SNV | Missense_Mutation | novel | c.1954N>A | p.Asp652Asn | p.D652N | Q9UI17 | protein_coding | tolerated(0.48) | benign(0.005) | TCGA-55-7283-01 | Lung | lung adenocarcinoma | Female | >=65 | III/IV | Chemotherapy | carboplatin | PR |
DMGDH | SNV | Missense_Mutation | rs772215706 | c.1687N>T | p.Gly563Cys | p.G563C | Q9UI17 | protein_coding | deleterious(0) | probably_damaging(0.999) | TCGA-67-3770-01 | Lung | lung adenocarcinoma | Female | >=65 | I/II | Unknown | Unknown | SD |
DMGDH | SNV | Missense_Mutation | rs760553323 | c.1210G>T | p.Ala404Ser | p.A404S | Q9UI17 | protein_coding | tolerated(0.57) | benign(0.385) | TCGA-97-A4M3-01 | Lung | lung adenocarcinoma | Female | >=65 | I/II | Unknown | Unknown | PD |
DMGDH | SNV | Missense_Mutation | rs760435362 | c.1565A>G | p.Tyr522Cys | p.Y522C | Q9UI17 | protein_coding | tolerated(1) | benign(0.019) | TCGA-L9-A7SV-01 | Lung | lung adenocarcinoma | Male | >=65 | I/II | Chemotherapy | cisplatin | CR |
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Related drugs of malignant transformation related genes |
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(DGIdb 4.0) |
Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
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