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Gene: ABI3BP |
Gene summary for ABI3BP |
 Gene summary. |
| Gene information | Species | Human | Gene symbol | ABI3BP | Gene ID | 25890 |
| Gene name | ABI family member 3 binding protein | |
| Gene Alias | NESHBP | |
| Cytomap | 3q12.2 | |
| Gene Type | protein-coding | GO ID | GO:0005575 | UniProtAcc | Q7Z7G0 |
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Malignant transformation analysis |
| Identification of the aberrant gene expression in precancerous and cancerous lesions by comparing the gene expression of stem-like cells in diseased tissues with normal stem cells |
| Malignant transformation involving gene list. |
| Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
| 25890 | ABI3BP | HTA11_4255_2000001011 | Human | Colorectum | SER | 1.54e-05 | 4.17e-01 | 0.0446 |
| 25890 | ABI3BP | HTA11_8622_2000001021 | Human | Colorectum | SER | 4.68e-03 | 2.44e-01 | 0.0528 |
| 25890 | ABI3BP | HTA11_6818_2000001011 | Human | Colorectum | AD | 9.51e-24 | 1.02e+00 | 0.0112 |
| 25890 | ABI3BP | HTA11_6818_2000001021 | Human | Colorectum | AD | 9.91e-26 | 7.44e-01 | 0.0588 |
| 25890 | ABI3BP | LZE2T | Human | Esophagus | ESCC | 4.23e-06 | 5.83e-01 | 0.082 |
| 25890 | ABI3BP | P10T-E | Human | Esophagus | ESCC | 1.61e-57 | 1.38e+00 | 0.116 |
| 25890 | ABI3BP | P11T-E | Human | Esophagus | ESCC | 9.13e-05 | 1.10e-01 | 0.1426 |
| 25890 | ABI3BP | P79T-E | Human | Esophagus | ESCC | 1.76e-59 | 1.97e+00 | 0.1154 |
| 25890 | ABI3BP | PTC07 | Human | Thyroid | PTC | 2.22e-07 | -5.11e-02 | 0.2044 |
| 25890 | ABI3BP | ATC12 | Human | Thyroid | ATC | 2.30e-42 | 1.01e+00 | 0.34 |
| 25890 | ABI3BP | ATC2 | Human | Thyroid | ATC | 4.72e-04 | 9.11e-01 | 0.34 |
| 25890 | ABI3BP | ATC4 | Human | Thyroid | ATC | 6.58e-50 | 1.28e+00 | 0.34 |
| 25890 | ABI3BP | ATC5 | Human | Thyroid | ATC | 1.59e-06 | 3.47e-02 | 0.34 |
| Page: 1 |
| Transcriptomic changes along malignancy continuum. |
| Tissue | Expression Dynamics | Abbreviation |
| Colorectum (GSE201348) |  | FAP: Familial adenomatous polyposis |
| CRC: Colorectal cancer | ||
| Colorectum (HTA11) |  | AD: Adenomas |
| SER: Sessile serrated lesions | ||
| MSI-H: Microsatellite-high colorectal cancer | ||
| MSS: Microsatellite stable colorectal cancer | ||
| Esophagus |  | ESCC: Esophageal squamous cell carcinoma |
| HGIN: High-grade intraepithelial neoplasias | ||
| LGIN: Low-grade intraepithelial neoplasias | ||
| Thyroid |  | ATC: Anaplastic thyroid cancer |
| HT: Hashimoto's thyroiditis | ||
| PTC: Papillary thyroid cancer |
| ∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
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Malignant transformation related pathway analysis |
| Find out the enriched GO biological processes and KEGG pathways involved in transition from healthy to precancer to cancer |
| Figure of enriched GO biological processes. |
| Tissue | Disease Stage | Enriched GO biological Processes |
| Colorectum | AD |  |
| Colorectum | SER |  |
| Colorectum | MSS |  |
| Colorectum | MSI-H |  |
| Colorectum | FAP |  |
| ∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
| Page: 1 2 3 4 5 6 7 8 9 |
| Enriched GO biological processes. |
| GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
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| Enriched KEGG pathways. |
| Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
| Page: 1 |
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Cell-cell communication analysis |
| Identification of potential cell-cell interactions between two cell types and their ligand-receptor pairs for different disease states |
| Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
| Page: 1 |
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Single-cell gene regulatory network inference analysis |
| Find out the significant the regulons (TFs) and the target genes of each regulon across cell types for different disease states |
| TF | Cell Type | Tissue | Disease Stage | Target Gene | RSS | Regulon Activity |
| ∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
| Page: 1 |
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Somatic mutation of malignant transformation related genes |
| Annotation of somatic variants for genes involved in malignant transformation |
| Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
| ABI3BP | SNV | Missense_Mutation | c.336N>T | p.Lys112Asn | p.K112N | Q7Z7G0 | protein_coding | deleterious(0) | possibly_damaging(0.811) | TCGA-B5-A1MR-01 | Endometrium | uterine corpus endometrioid carcinoma | Female | >=65 | III/IV | Unknown | Unknown | SD | |
| ABI3BP | SNV | Missense_Mutation | novel | c.2956A>G | p.Arg986Gly | p.R986G | Q7Z7G0 | protein_coding | deleterious(0) | probably_damaging(0.995) | TCGA-B5-A1MX-01 | Endometrium | uterine corpus endometrioid carcinoma | Female | <65 | I/II | Hormone Therapy | megace | SD |
| ABI3BP | SNV | Missense_Mutation | novel | c.659N>C | p.Val220Ala | p.V220A | Q7Z7G0 | protein_coding | deleterious(0.01) | benign(0.199) | TCGA-B5-A3FA-01 | Endometrium | uterine corpus endometrioid carcinoma | Female | >=65 | I/II | Unknown | Unknown | SD |
| ABI3BP | SNV | Missense_Mutation | rs778719617 | c.1516A>G | p.Thr506Ala | p.T506A | Q7Z7G0 | protein_coding | tolerated(0.33) | benign(0.068) | TCGA-B5-A3FC-01 | Endometrium | uterine corpus endometrioid carcinoma | Female | <65 | I/II | Unknown | Unknown | SD |
| ABI3BP | SNV | Missense_Mutation | rs751074977 | c.998G>A | p.Arg333Gln | p.R333Q | Q7Z7G0 | protein_coding | tolerated(1) | benign(0) | TCGA-B5-A3FC-01 | Endometrium | uterine corpus endometrioid carcinoma | Female | <65 | I/II | Unknown | Unknown | SD |
| ABI3BP | SNV | Missense_Mutation | c.1084N>A | p.Ala362Thr | p.A362T | Q7Z7G0 | protein_coding | deleterious(0.01) | benign(0.185) | TCGA-BG-A0M4-01 | Endometrium | uterine corpus endometrioid carcinoma | Female | <65 | I/II | Chemotherapy | carboplatin | SD | |
| ABI3BP | SNV | Missense_Mutation | novel | c.496C>T | p.Arg166Cys | p.R166C | Q7Z7G0 | protein_coding | deleterious(0) | probably_damaging(0.997) | TCGA-BK-A6W3-01 | Endometrium | uterine corpus endometrioid carcinoma | Female | <65 | I/II | Unknown | Unknown | SD |
| ABI3BP | SNV | Missense_Mutation | novel | c.1676N>A | p.Pro559His | p.P559H | Q7Z7G0 | protein_coding | deleterious(0.01) | possibly_damaging(0.681) | TCGA-BS-A0UF-01 | Endometrium | uterine corpus endometrioid carcinoma | Female | >=65 | I/II | Unknown | Unknown | SD |
| ABI3BP | SNV | Missense_Mutation | rs553697655 | c.1238G>A | p.Arg413His | p.R413H | Q7Z7G0 | protein_coding | tolerated(0.17) | benign(0) | TCGA-D1-A103-01 | Endometrium | uterine corpus endometrioid carcinoma | Female | >=65 | I/II | Unknown | Unknown | SD |
| ABI3BP | SNV | Missense_Mutation | rs761330735 | c.313C>A | p.Pro105Thr | p.P105T | Q7Z7G0 | protein_coding | deleterious(0) | probably_damaging(0.998) | TCGA-D1-A16J-01 | Endometrium | uterine corpus endometrioid carcinoma | Female | <65 | I/II | Chemotherapy | carboplatin | SD |
| Page: 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 |
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Related drugs of malignant transformation related genes |
| Identification of chemicals and drugs interact with genes involved in malignant transfromation |
| (DGIdb 4.0) |
| Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
| Page: 1 |
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