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Gene: SEMA4C |
Gene summary for SEMA4C |
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Gene information | Species | Human | Gene symbol | SEMA4C | Gene ID | 54910 |
Gene name | semaphorin 4C | |
Gene Alias | M-SEMA-F | |
Cytomap | 2q11.2 | |
Gene Type | protein-coding | GO ID | GO:0000165 | UniProtAcc | Q9C0C4 |
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Malignant transformation analysis |
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Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
54910 | SEMA4C | LZE8T | Human | Esophagus | ESCC | 6.17e-03 | 7.58e-02 | 0.067 |
54910 | SEMA4C | P1T-E | Human | Esophagus | ESCC | 7.94e-05 | 2.39e-01 | 0.0875 |
54910 | SEMA4C | P2T-E | Human | Esophagus | ESCC | 6.35e-14 | 2.50e-01 | 0.1177 |
54910 | SEMA4C | P4T-E | Human | Esophagus | ESCC | 3.05e-13 | 1.88e-01 | 0.1323 |
54910 | SEMA4C | P8T-E | Human | Esophagus | ESCC | 1.28e-11 | 1.11e-01 | 0.0889 |
54910 | SEMA4C | P10T-E | Human | Esophagus | ESCC | 9.26e-12 | 1.77e-01 | 0.116 |
54910 | SEMA4C | P11T-E | Human | Esophagus | ESCC | 1.33e-05 | 1.16e-01 | 0.1426 |
54910 | SEMA4C | P12T-E | Human | Esophagus | ESCC | 6.43e-21 | 3.36e-01 | 0.1122 |
54910 | SEMA4C | P15T-E | Human | Esophagus | ESCC | 1.78e-12 | 1.72e-01 | 0.1149 |
54910 | SEMA4C | P16T-E | Human | Esophagus | ESCC | 1.95e-09 | 9.11e-02 | 0.1153 |
54910 | SEMA4C | P20T-E | Human | Esophagus | ESCC | 1.46e-04 | 1.00e-02 | 0.1124 |
54910 | SEMA4C | P21T-E | Human | Esophagus | ESCC | 7.65e-06 | 8.19e-02 | 0.1617 |
54910 | SEMA4C | P22T-E | Human | Esophagus | ESCC | 3.19e-13 | 8.22e-02 | 0.1236 |
54910 | SEMA4C | P23T-E | Human | Esophagus | ESCC | 2.51e-11 | 9.41e-02 | 0.108 |
54910 | SEMA4C | P24T-E | Human | Esophagus | ESCC | 1.12e-05 | 5.48e-02 | 0.1287 |
54910 | SEMA4C | P26T-E | Human | Esophagus | ESCC | 8.05e-12 | 1.13e-01 | 0.1276 |
54910 | SEMA4C | P27T-E | Human | Esophagus | ESCC | 2.76e-11 | 1.01e-01 | 0.1055 |
54910 | SEMA4C | P28T-E | Human | Esophagus | ESCC | 4.46e-13 | 1.32e-01 | 0.1149 |
54910 | SEMA4C | P30T-E | Human | Esophagus | ESCC | 3.18e-09 | 2.88e-01 | 0.137 |
54910 | SEMA4C | P31T-E | Human | Esophagus | ESCC | 1.12e-03 | -3.00e-03 | 0.1251 |
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∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
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Malignant transformation related pathway analysis |
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Tissue | Disease Stage | Enriched GO biological Processes |
Colorectum | AD | ![]() |
Colorectum | SER | ![]() |
Colorectum | MSS | ![]() |
Colorectum | MSI-H | ![]() |
Colorectum | FAP | ![]() |
∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
Page: 1 2 3 4 5 6 7 8 9 |
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GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
GO:0016049110 | Esophagus | ESCC | cell growth | 289/8552 | 482/18723 | 1.29e-10 | 3.77e-09 | 289 |
GO:000155819 | Esophagus | ESCC | regulation of cell growth | 248/8552 | 414/18723 | 2.97e-09 | 6.45e-08 | 248 |
GO:000184115 | Esophagus | ESCC | neural tube formation | 75/8552 | 102/18723 | 9.68e-09 | 1.95e-07 | 75 |
GO:000184314 | Esophagus | ESCC | neural tube closure | 66/8552 | 88/18723 | 1.98e-08 | 3.82e-07 | 66 |
GO:001402014 | Esophagus | ESCC | primary neural tube formation | 69/8552 | 94/18723 | 4.22e-08 | 7.76e-07 | 69 |
GO:006060614 | Esophagus | ESCC | tube closure | 66/8552 | 89/18723 | 4.24e-08 | 7.76e-07 | 66 |
GO:003253520 | Esophagus | ESCC | regulation of cellular component size | 227/8552 | 383/18723 | 4.77e-08 | 8.60e-07 | 227 |
GO:003109818 | Esophagus | ESCC | stress-activated protein kinase signaling cascade | 154/8552 | 247/18723 | 8.53e-08 | 1.44e-06 | 154 |
GO:00219159 | Esophagus | ESCC | neural tube development | 101/8552 | 152/18723 | 1.78e-07 | 2.79e-06 | 101 |
GO:00163316 | Esophagus | ESCC | morphogenesis of embryonic epithelium | 98/8552 | 147/18723 | 2.12e-07 | 3.27e-06 | 98 |
GO:000183814 | Esophagus | ESCC | embryonic epithelial tube formation | 83/8552 | 121/18723 | 2.78e-07 | 4.08e-06 | 83 |
GO:005140318 | Esophagus | ESCC | stress-activated MAPK cascade | 147/8552 | 239/18723 | 5.43e-07 | 7.18e-06 | 147 |
GO:003514815 | Esophagus | ESCC | tube formation | 96/8552 | 148/18723 | 1.86e-06 | 2.16e-05 | 96 |
GO:00721759 | Esophagus | ESCC | epithelial tube formation | 86/8552 | 132/18723 | 4.81e-06 | 5.10e-05 | 86 |
GO:00459267 | Esophagus | ESCC | negative regulation of growth | 148/8552 | 249/18723 | 7.88e-06 | 7.73e-05 | 148 |
GO:006056210 | Esophagus | ESCC | epithelial tube morphogenesis | 187/8552 | 325/18723 | 9.95e-06 | 9.44e-05 | 187 |
GO:007030217 | Esophagus | ESCC | regulation of stress-activated protein kinase signaling cascade | 119/8552 | 195/18723 | 1.07e-05 | 1.01e-04 | 119 |
GO:003287217 | Esophagus | ESCC | regulation of stress-activated MAPK cascade | 116/8552 | 192/18723 | 2.63e-05 | 2.21e-04 | 116 |
GO:00488638 | Esophagus | ESCC | stem cell differentiation | 122/8552 | 206/18723 | 5.95e-05 | 4.59e-04 | 122 |
GO:005076710 | Esophagus | ESCC | regulation of neurogenesis | 203/8552 | 364/18723 | 6.10e-05 | 4.68e-04 | 203 |
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Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
hsa0436016 | Esophagus | ESCC | Axon guidance | 108/4205 | 182/8465 | 5.13e-03 | 1.30e-02 | 6.67e-03 | 108 |
hsa0436017 | Esophagus | ESCC | Axon guidance | 108/4205 | 182/8465 | 5.13e-03 | 1.30e-02 | 6.67e-03 | 108 |
hsa0436014 | Oral cavity | OSCC | Axon guidance | 97/3704 | 182/8465 | 5.59e-03 | 1.33e-02 | 6.76e-03 | 97 |
hsa0436015 | Oral cavity | OSCC | Axon guidance | 97/3704 | 182/8465 | 5.59e-03 | 1.33e-02 | 6.76e-03 | 97 |
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Cell-cell communication analysis |
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Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
SEMA4C | PLXNB2 | SEMA4C_PLXNB2 | SEMA4 | CRC | MSI-H |
SEMA4C | PLXNB2 | SEMA4C_PLXNB2 | SEMA4 | CRC | MSS |
SEMA4C | PLXNB2 | SEMA4C_PLXNB2 | SEMA4 | Endometrium | AEH |
SEMA4C | PLXNB2 | SEMA4C_PLXNB2 | SEMA4 | Endometrium | Healthy |
SEMA4C | PLXNB2 | SEMA4C_PLXNB2 | SEMA4 | HNSCC | Precancer |
SEMA4C | PLXNB2 | SEMA4C_PLXNB2 | SEMA4 | Liver | Healthy |
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Single-cell gene regulatory network inference analysis |
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TF | Cell Type | Tissue | Disease Stage | Target Gene | RSS | Regulon Activity |
∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
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Somatic mutation of malignant transformation related genes |
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Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
SEMA4C | SNV | Missense_Mutation | novel | c.2203N>T | p.Gly735Cys | p.G735C | Q9C0C4 | protein_coding | deleterious(0.02) | probably_damaging(0.956) | TCGA-CV-6945-01 | Oral cavity | head & neck squamous cell carcinoma | Male | <65 | I/II | Unknown | Unknown | PD |
SEMA4C | SNV | Missense_Mutation | novel | c.2383N>A | p.Gly795Arg | p.G795R | Q9C0C4 | protein_coding | deleterious(0.01) | possibly_damaging(0.484) | TCGA-D6-6516-01 | Oral cavity | head & neck squamous cell carcinoma | Male | >=65 | I/II | Unknown | Unknown | SD |
SEMA4C | SNV | Missense_Mutation | novel | c.288N>C | p.Lys96Asn | p.K96N | Q9C0C4 | protein_coding | deleterious(0) | possibly_damaging(0.906) | TCGA-RS-A6TP-01 | Oral cavity | head & neck squamous cell carcinoma | Male | <65 | I/II | Unknown | Unknown | SD |
SEMA4C | SNV | Missense_Mutation | c.468N>T | p.Lys156Asn | p.K156N | Q9C0C4 | protein_coding | deleterious(0) | possibly_damaging(0.848) | TCGA-CH-5739-01 | Prostate | prostate adenocarcinoma | Male | >=65 | 7 | Unknown | Unknown | SD | |
SEMA4C | SNV | Missense_Mutation | c.853T>C | p.Cys285Arg | p.C285R | Q9C0C4 | protein_coding | deleterious(0) | probably_damaging(1) | TCGA-EJ-7317-01 | Prostate | prostate adenocarcinoma | Male | >=65 | 7 | Unknown | Unknown | SD | |
SEMA4C | SNV | Missense_Mutation | c.1631N>G | p.Ser544Trp | p.S544W | Q9C0C4 | protein_coding | deleterious(0.01) | possibly_damaging(0.611) | TCGA-HC-A9TE-01 | Prostate | prostate adenocarcinoma | Male | <65 | 9 | Hormone Therapy | eligard | SD | |
SEMA4C | SNV | Missense_Mutation | rs774137372 | c.1459N>A | p.Gly487Ser | p.G487S | Q9C0C4 | protein_coding | tolerated(0.11) | possibly_damaging(0.825) | TCGA-KK-A59V-01 | Prostate | prostate adenocarcinoma | Male | <65 | 9 | Unknown | Unknown | SD |
SEMA4C | SNV | Missense_Mutation | novel | c.577C>T | p.Arg193Cys | p.R193C | Q9C0C4 | protein_coding | deleterious(0) | probably_damaging(1) | TCGA-BR-7717-01 | Stomach | stomach adenocarcinoma | Male | <65 | III/IV | Unknown | Unknown | SD |
SEMA4C | SNV | Missense_Mutation | c.2372G>A | p.Arg791His | p.R791H | Q9C0C4 | protein_coding | deleterious(0.04) | probably_damaging(0.996) | TCGA-CD-A4MG-01 | Stomach | stomach adenocarcinoma | Male | >=65 | I/II | Unknown | Unknown | PD | |
SEMA4C | SNV | Missense_Mutation | c.2032G>C | p.Val678Leu | p.V678L | Q9C0C4 | protein_coding | tolerated(0.33) | benign(0.003) | TCGA-CG-4465-01 | Stomach | stomach adenocarcinoma | Female | >=65 | III/IV | Chemotherapy | cisplatin | SD |
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Related drugs of malignant transformation related genes |
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(DGIdb 4.0) |
Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
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