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Gene: RXRG |
Gene summary for RXRG |
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Gene information | Species | Human | Gene symbol | RXRG | Gene ID | 6258 |
Gene name | retinoid X receptor gamma | |
Gene Alias | NR2B3 | |
Cytomap | 1q23.3 | |
Gene Type | protein-coding | GO ID | GO:0006139 | UniProtAcc | A0A087WZ88 |
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Malignant transformation analysis |
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Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
6258 | RXRG | male-WTA | Human | Thyroid | PTC | 2.83e-29 | 3.81e-01 | 0.1037 |
6258 | RXRG | PTC01 | Human | Thyroid | PTC | 2.83e-29 | 5.69e-01 | 0.1899 |
6258 | RXRG | PTC04 | Human | Thyroid | PTC | 3.28e-16 | 3.39e-01 | 0.1927 |
6258 | RXRG | PTC05 | Human | Thyroid | PTC | 7.16e-14 | 5.31e-01 | 0.2065 |
6258 | RXRG | PTC06 | Human | Thyroid | PTC | 3.97e-14 | 3.43e-01 | 0.2057 |
6258 | RXRG | PTC07 | Human | Thyroid | PTC | 1.12e-33 | 5.97e-01 | 0.2044 |
6258 | RXRG | ATC13 | Human | Thyroid | ATC | 1.51e-53 | 1.25e+00 | 0.34 |
6258 | RXRG | ATC5 | Human | Thyroid | ATC | 5.26e-62 | 1.34e+00 | 0.34 |
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∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
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Malignant transformation related pathway analysis |
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Tissue | Disease Stage | Enriched GO biological Processes |
Colorectum | AD | ![]() |
Colorectum | SER | ![]() |
Colorectum | MSS | ![]() |
Colorectum | MSI-H | ![]() |
Colorectum | FAP | ![]() |
∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
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GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
GO:0048545113 | Thyroid | PTC | response to steroid hormone | 158/5968 | 339/18723 | 8.10e-09 | 2.00e-07 | 158 |
GO:003052228 | Thyroid | PTC | intracellular receptor signaling pathway | 126/5968 | 265/18723 | 6.31e-08 | 1.31e-06 | 126 |
GO:0071383112 | Thyroid | PTC | cellular response to steroid hormone stimulus | 98/5968 | 204/18723 | 9.83e-07 | 1.47e-05 | 98 |
GO:004340124 | Thyroid | PTC | steroid hormone mediated signaling pathway | 69/5968 | 136/18723 | 3.57e-06 | 4.58e-05 | 69 |
GO:000975519 | Thyroid | PTC | hormone-mediated signaling pathway | 80/5968 | 190/18723 | 1.84e-03 | 9.91e-03 | 80 |
GO:0048545210 | Thyroid | ATC | response to steroid hormone | 168/6293 | 339/18723 | 7.21e-10 | 1.88e-08 | 168 |
GO:0030522112 | Thyroid | ATC | intracellular receptor signaling pathway | 134/6293 | 265/18723 | 7.58e-09 | 1.63e-07 | 134 |
GO:007138328 | Thyroid | ATC | cellular response to steroid hormone stimulus | 103/6293 | 204/18723 | 4.32e-07 | 6.30e-06 | 103 |
GO:0043401111 | Thyroid | ATC | steroid hormone mediated signaling pathway | 71/6293 | 136/18723 | 5.72e-06 | 6.07e-05 | 71 |
GO:0009755110 | Thyroid | ATC | hormone-mediated signaling pathway | 83/6293 | 190/18723 | 2.34e-03 | 1.09e-02 | 83 |
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Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
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Cell-cell communication analysis |
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Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
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Single-cell gene regulatory network inference analysis |
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∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
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Somatic mutation of malignant transformation related genes |
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Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
RXRG | SNV | Missense_Mutation | novel | c.1201N>T | p.Leu401Phe | p.L401F | P48443 | protein_coding | deleterious(0.01) | probably_damaging(0.998) | TCGA-55-8616-01 | Lung | lung adenocarcinoma | Female | <65 | I/II | Unknown | Unknown | SD |
RXRG | SNV | Missense_Mutation | c.55C>A | p.Pro19Thr | p.P19T | P48443 | protein_coding | deleterious_low_confidence(0.02) | benign(0) | TCGA-73-4670-01 | Lung | lung adenocarcinoma | Female | >=65 | III/IV | Chemotherapy | carboplatin | SD | |
RXRG | SNV | Missense_Mutation | c.1224G>C | p.Lys408Asn | p.K408N | P48443 | protein_coding | tolerated(0.07) | benign(0.071) | TCGA-78-7536-01 | Lung | lung adenocarcinoma | Male | >=65 | III/IV | Unknown | Unknown | PD | |
RXRG | SNV | Missense_Mutation | c.648N>A | p.Ser216Arg | p.S216R | P48443 | protein_coding | deleterious(0.04) | possibly_damaging(0.462) | TCGA-91-6829-01 | Lung | lung adenocarcinoma | Male | >=65 | I/II | Unknown | Unknown | SD | |
RXRG | SNV | Missense_Mutation | novel | c.287N>A | p.Pro96His | p.P96H | P48443 | protein_coding | tolerated(0.07) | benign(0.001) | TCGA-L9-A5IP-01 | Lung | lung adenocarcinoma | Female | <65 | III/IV | Unknown | Unknown | PD |
RXRG | SNV | Missense_Mutation | c.1006A>T | p.Ser336Cys | p.S336C | P48443 | protein_coding | deleterious(0) | probably_damaging(0.946) | TCGA-L9-A8F4-01 | Lung | lung adenocarcinoma | Female | <65 | I/II | Unknown | Unknown | SD | |
RXRG | SNV | Missense_Mutation | c.677G>A | p.Cys226Tyr | p.C226Y | P48443 | protein_coding | tolerated(0.07) | benign(0.04) | TCGA-21-1070-01 | Lung | lung squamous cell carcinoma | Female | <65 | III/IV | Unknown | Unknown | SD | |
RXRG | SNV | Missense_Mutation | c.92C>A | p.Ala31Glu | p.A31E | P48443 | protein_coding | tolerated_low_confidence(1) | benign(0.062) | TCGA-43-6143-01 | Lung | lung squamous cell carcinoma | Male | >=65 | I/II | Other, specify in notesVaccine | recmage3-as+as15 | SD | |
RXRG | SNV | Missense_Mutation | novel | c.569N>A | p.Arg190His | p.R190H | P48443 | protein_coding | deleterious(0) | probably_damaging(0.997) | TCGA-56-A4ZJ-01 | Lung | lung squamous cell carcinoma | Female | >=65 | I/II | Unknown | Unknown | SD |
RXRG | SNV | Missense_Mutation | c.1364N>C | p.Met455Thr | p.M455T | P48443 | protein_coding | deleterious(0.04) | probably_damaging(0.933) | TCGA-60-2711-01 | Lung | lung squamous cell carcinoma | Female | <65 | I/II | Unknown | Unknown | SD |
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Related drugs of malignant transformation related genes |
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(DGIdb 4.0) |
Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
6258 | RXRG | NUCLEAR HORMONE RECEPTOR, DRUGGABLE GENOME | agonist | CHEMBL705 | ALITRETINOIN | |
6258 | RXRG | NUCLEAR HORMONE RECEPTOR, DRUGGABLE GENOME | NRX-4204 | |||
6258 | RXRG | NUCLEAR HORMONE RECEPTOR, DRUGGABLE GENOME | agonist | CHEMBL1023 | BEXAROTENE | |
6258 | RXRG | NUCLEAR HORMONE RECEPTOR, DRUGGABLE GENOME | ADAPALENE | ADAPALENE | ||
6258 | RXRG | NUCLEAR HORMONE RECEPTOR, DRUGGABLE GENOME | agonist | 135650520 | BEXAROTENE | |
6258 | RXRG | NUCLEAR HORMONE RECEPTOR, DRUGGABLE GENOME | 9cUAB-30 | |||
6258 | RXRG | NUCLEAR HORMONE RECEPTOR, DRUGGABLE GENOME | TRETINOIN | TRETINOIN | ||
6258 | RXRG | NUCLEAR HORMONE RECEPTOR, DRUGGABLE GENOME | ALITRETIONINE | |||
6258 | RXRG | NUCLEAR HORMONE RECEPTOR, DRUGGABLE GENOME | agonist | CHEMBL75133 | IRX-4204 | |
6258 | RXRG | NUCLEAR HORMONE RECEPTOR, DRUGGABLE GENOME | agonist | CHEMBL1131 | ACITRETIN |
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