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Gene: GPAT3 |
Gene summary for GPAT3 |
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Gene information | Species | Human | Gene symbol | GPAT3 | Gene ID | 84803 |
Gene name | glycerol-3-phosphate acyltransferase 3 | |
Gene Alias | AGPAT 10 | |
Cytomap | 4q21.23 | |
Gene Type | protein-coding | GO ID | GO:0006072 | UniProtAcc | A0A024RDG5 |
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Malignant transformation analysis |
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Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
84803 | GPAT3 | LZE4T | Human | Esophagus | ESCC | 4.13e-02 | 2.76e-01 | 0.0811 |
84803 | GPAT3 | LZE7T | Human | Esophagus | ESCC | 7.35e-03 | 3.07e-01 | 0.0667 |
84803 | GPAT3 | LZE8T | Human | Esophagus | ESCC | 1.02e-02 | -2.96e-02 | 0.067 |
84803 | GPAT3 | P8T-E | Human | Esophagus | ESCC | 6.58e-04 | -1.03e-01 | 0.0889 |
84803 | GPAT3 | P9T-E | Human | Esophagus | ESCC | 3.25e-10 | 1.69e-01 | 0.1131 |
84803 | GPAT3 | P12T-E | Human | Esophagus | ESCC | 5.98e-07 | -4.90e-02 | 0.1122 |
84803 | GPAT3 | P15T-E | Human | Esophagus | ESCC | 1.08e-09 | 2.22e-01 | 0.1149 |
84803 | GPAT3 | P21T-E | Human | Esophagus | ESCC | 4.01e-05 | -5.91e-02 | 0.1617 |
84803 | GPAT3 | P22T-E | Human | Esophagus | ESCC | 1.93e-02 | -6.73e-02 | 0.1236 |
84803 | GPAT3 | P28T-E | Human | Esophagus | ESCC | 2.78e-16 | 6.14e-01 | 0.1149 |
84803 | GPAT3 | P31T-E | Human | Esophagus | ESCC | 9.70e-05 | -5.99e-02 | 0.1251 |
84803 | GPAT3 | P39T-E | Human | Esophagus | ESCC | 4.40e-11 | 8.31e-02 | 0.0894 |
84803 | GPAT3 | P48T-E | Human | Esophagus | ESCC | 1.67e-04 | -6.30e-02 | 0.0959 |
84803 | GPAT3 | P49T-E | Human | Esophagus | ESCC | 4.02e-05 | 1.06e+00 | 0.1768 |
84803 | GPAT3 | P57T-E | Human | Esophagus | ESCC | 4.10e-08 | -1.65e-02 | 0.0926 |
84803 | GPAT3 | P61T-E | Human | Esophagus | ESCC | 3.77e-02 | -9.56e-02 | 0.099 |
84803 | GPAT3 | P62T-E | Human | Esophagus | ESCC | 1.07e-03 | -5.71e-02 | 0.1302 |
84803 | GPAT3 | P75T-E | Human | Esophagus | ESCC | 2.02e-04 | -7.49e-02 | 0.1125 |
84803 | GPAT3 | P76T-E | Human | Esophagus | ESCC | 9.87e-05 | -5.81e-02 | 0.1207 |
84803 | GPAT3 | P83T-E | Human | Esophagus | ESCC | 8.02e-09 | 3.51e-01 | 0.1738 |
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∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
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Malignant transformation related pathway analysis |
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Tissue | Disease Stage | Enriched GO biological Processes |
Colorectum | AD | ![]() |
Colorectum | SER | ![]() |
Colorectum | MSS | ![]() |
Colorectum | MSI-H | ![]() |
Colorectum | FAP | ![]() |
∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
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GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
GO:0006650 | Colorectum | AD | glycerophospholipid metabolic process | 83/3918 | 306/18723 | 5.40e-03 | 3.55e-02 | 83 |
GO:0006644 | Colorectum | AD | phospholipid metabolic process | 101/3918 | 383/18723 | 5.80e-03 | 3.67e-02 | 101 |
GO:0045017 | Colorectum | AD | glycerolipid biosynthetic process | 69/3918 | 252/18723 | 8.33e-03 | 4.88e-02 | 69 |
GO:0008654 | Colorectum | FAP | phospholipid biosynthetic process | 54/2622 | 253/18723 | 8.88e-04 | 9.08e-03 | 54 |
GO:00066502 | Colorectum | FAP | glycerophospholipid metabolic process | 62/2622 | 306/18723 | 1.54e-03 | 1.38e-02 | 62 |
GO:00066442 | Colorectum | FAP | phospholipid metabolic process | 74/2622 | 383/18723 | 2.24e-03 | 1.83e-02 | 74 |
GO:0046473 | Colorectum | FAP | phosphatidic acid metabolic process | 12/2622 | 37/18723 | 3.43e-03 | 2.48e-02 | 12 |
GO:0046474 | Colorectum | FAP | glycerophospholipid biosynthetic process | 44/2622 | 211/18723 | 3.98e-03 | 2.76e-02 | 44 |
GO:00450172 | Colorectum | FAP | glycerolipid biosynthetic process | 50/2622 | 252/18723 | 6.32e-03 | 3.95e-02 | 50 |
GO:00086544 | Esophagus | ESCC | phospholipid biosynthetic process | 162/8552 | 253/18723 | 2.59e-09 | 5.73e-08 | 162 |
GO:00464744 | Esophagus | ESCC | glycerophospholipid biosynthetic process | 135/8552 | 211/18723 | 5.75e-08 | 1.02e-06 | 135 |
GO:00450175 | Esophagus | ESCC | glycerolipid biosynthetic process | 154/8552 | 252/18723 | 5.20e-07 | 6.96e-06 | 154 |
GO:00066446 | Esophagus | ESCC | phospholipid metabolic process | 218/8552 | 383/18723 | 5.37e-06 | 5.59e-05 | 218 |
GO:00066505 | Esophagus | ESCC | glycerophospholipid metabolic process | 174/8552 | 306/18723 | 4.92e-05 | 3.85e-04 | 174 |
GO:00319294 | Esophagus | ESCC | TOR signaling | 79/8552 | 126/18723 | 8.57e-05 | 6.21e-04 | 79 |
GO:00066541 | Esophagus | ESCC | phosphatidic acid biosynthetic process | 26/8552 | 33/18723 | 1.06e-04 | 7.43e-04 | 26 |
GO:00464733 | Esophagus | ESCC | phosphatidic acid metabolic process | 28/8552 | 37/18723 | 2.00e-04 | 1.26e-03 | 28 |
GO:00464864 | Esophagus | ESCC | glycerolipid metabolic process | 211/8552 | 392/18723 | 6.51e-04 | 3.46e-03 | 211 |
GO:00320061 | Esophagus | ESCC | regulation of TOR signaling | 63/8552 | 104/18723 | 1.55e-03 | 7.29e-03 | 63 |
GO:00463411 | Esophagus | ESCC | CDP-diacylglycerol metabolic process | 11/8552 | 14/18723 | 1.30e-02 | 4.27e-02 | 11 |
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Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
hsa005615 | Liver | HCC | Glycerolipid metabolism | 41/4020 | 63/8465 | 3.59e-03 | 1.12e-02 | 6.22e-03 | 41 |
hsa0056112 | Liver | HCC | Glycerolipid metabolism | 41/4020 | 63/8465 | 3.59e-03 | 1.12e-02 | 6.22e-03 | 41 |
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Cell-cell communication analysis |
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Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
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Single-cell gene regulatory network inference analysis |
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TF | Cell Type | Tissue | Disease Stage | Target Gene | RSS | Regulon Activity |
∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
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Somatic mutation of malignant transformation related genes |
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Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
GPAT3 | SNV | Missense_Mutation | novel | c.1128A>C | p.Glu376Asp | p.E376D | Q53EU6 | protein_coding | tolerated(0.22) | benign(0.011) | TCGA-43-A474-01 | Lung | lung squamous cell carcinoma | Male | >=65 | I/II | Chemotherapy | carboplatin | CR |
GPAT3 | insertion | Frame_Shift_Ins | novel | c.916dupT | p.Cys306LeufsTer11 | p.C306Lfs*11 | Q53EU6 | protein_coding | TCGA-NC-A5HE-01 | Lung | lung squamous cell carcinoma | Male | <65 | I/II | Chemotherapy | cisplatin | CR | ||
GPAT3 | SNV | Missense_Mutation | novel | c.1007N>T | p.Gln336Leu | p.Q336L | Q53EU6 | protein_coding | tolerated(0.09) | benign(0.022) | TCGA-D6-6823-01 | Oral cavity | head & neck squamous cell carcinoma | Male | <65 | I/II | Unknown | Unknown | SD |
GPAT3 | SNV | Missense_Mutation | novel | c.1018N>T | p.Ala340Ser | p.A340S | Q53EU6 | protein_coding | deleterious(0.01) | benign(0.317) | TCGA-ZG-A9M4-01 | Prostate | prostate adenocarcinoma | Male | >=65 | 9 | Unknown | Unknown | SD |
GPAT3 | SNV | Missense_Mutation | novel | c.260N>T | p.Arg87Leu | p.R87L | Q53EU6 | protein_coding | tolerated(0.16) | possibly_damaging(0.454) | TCGA-R5-A7ZE-01 | Stomach | stomach adenocarcinoma | Female | >=65 | III/IV | Unknown | Unknown | PD |
GPAT3 | deletion | Frame_Shift_Del | novel | c.707delT | p.Leu236Ter | p.L236* | Q53EU6 | protein_coding | TCGA-HJ-7597-01 | Stomach | stomach adenocarcinoma | Female | >=65 | I/II | Chemotherapy | fluorouracil | CR |
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Related drugs of malignant transformation related genes |
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(DGIdb 4.0) |
Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
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