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Gene: MYOM1 |
Gene summary for MYOM1 |
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Gene information | Species | Human | Gene symbol | MYOM1 | Gene ID | 8736 |
Gene name | myomesin 1 | |
Gene Alias | SKELEMIN | |
Cytomap | 18p11.31 | |
Gene Type | protein-coding | GO ID | GO:0001654 | UniProtAcc | P52179 |
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Malignant transformation analysis |
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Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
8736 | MYOM1 | NAFLD1 | Human | Liver | NAFLD | 9.98e-04 | 8.05e-01 | -0.04 |
8736 | MYOM1 | HCC1_Meng | Human | Liver | HCC | 1.03e-37 | -3.71e-02 | 0.0246 |
8736 | MYOM1 | HCC2_Meng | Human | Liver | HCC | 3.93e-04 | -6.95e-02 | 0.0107 |
8736 | MYOM1 | HCC1 | Human | Liver | HCC | 2.04e-04 | 2.93e+00 | 0.5336 |
8736 | MYOM1 | S028 | Human | Liver | HCC | 6.41e-06 | 2.89e-01 | 0.2503 |
8736 | MYOM1 | S029 | Human | Liver | HCC | 2.52e-03 | 2.81e-01 | 0.2581 |
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Tissue | Expression Dynamics | Abbreviation |
Liver | ![]() | HCC: Hepatocellular carcinoma |
NAFLD: Non-alcoholic fatty liver disease |
∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
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Malignant transformation related pathway analysis |
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Tissue | Disease Stage | Enriched GO biological Processes |
Colorectum | AD | ![]() |
Colorectum | SER | ![]() |
Colorectum | MSS | ![]() |
Colorectum | MSI-H | ![]() |
Colorectum | FAP | ![]() |
∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
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GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
GO:00512227 | Liver | NAFLD | positive regulation of protein transport | 55/1882 | 303/18723 | 1.07e-05 | 3.35e-04 | 55 |
GO:19049517 | Liver | NAFLD | positive regulation of establishment of protein localization | 55/1882 | 319/18723 | 4.79e-05 | 1.14e-03 | 55 |
GO:00355926 | Liver | NAFLD | establishment of protein localization to extracellular region | 52/1882 | 360/18723 | 4.80e-03 | 3.81e-02 | 52 |
GO:00507147 | Liver | NAFLD | positive regulation of protein secretion | 24/1882 | 137/18723 | 4.89e-03 | 3.85e-02 | 24 |
GO:00093066 | Liver | NAFLD | protein secretion | 51/1882 | 359/18723 | 7.17e-03 | 4.96e-02 | 51 |
GO:190495122 | Liver | HCC | positive regulation of establishment of protein localization | 207/7958 | 319/18723 | 3.95e-16 | 3.29e-14 | 207 |
GO:005122222 | Liver | HCC | positive regulation of protein transport | 194/7958 | 303/18723 | 2.41e-14 | 1.56e-12 | 194 |
GO:003559212 | Liver | HCC | establishment of protein localization to extracellular region | 176/7958 | 360/18723 | 7.96e-03 | 3.15e-02 | 176 |
GO:000930612 | Liver | HCC | protein secretion | 175/7958 | 359/18723 | 9.32e-03 | 3.57e-02 | 175 |
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Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
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Cell-cell communication analysis |
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Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
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Single-cell gene regulatory network inference analysis |
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TF | Cell Type | Tissue | Disease Stage | Target Gene | RSS | Regulon Activity |
∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
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Somatic mutation of malignant transformation related genes |
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Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
MYOM1 | SNV | Missense_Mutation | c.109G>A | p.Ala37Thr | p.A37T | P52179 | protein_coding | deleterious_low_confidence(0.05) | possibly_damaging(0.692) | TCGA-D5-6928-01 | Colorectum | colon adenocarcinoma | Male | >=65 | I/II | Unknown | Unknown | SD | |
MYOM1 | SNV | Missense_Mutation | c.4949N>G | p.Asn1650Ser | p.N1650S | P52179 | protein_coding | deleterious(0) | probably_damaging(0.978) | TCGA-G4-6320-01 | Colorectum | colon adenocarcinoma | Male | >=65 | III/IV | Chemotherapy | oxaliplatin | SD | |
MYOM1 | SNV | Missense_Mutation | novel | c.5027N>C | p.Glu1676Ala | p.E1676A | P52179 | protein_coding | tolerated_low_confidence(0.07) | benign(0) | TCGA-G4-6586-01 | Colorectum | colon adenocarcinoma | Female | >=65 | I/II | Unknown | Unknown | SD |
MYOM1 | SNV | Missense_Mutation | c.3076N>C | p.Ser1026Arg | p.S1026R | P52179 | protein_coding | deleterious(0) | probably_damaging(0.983) | TCGA-NH-A6GC-01 | Colorectum | colon adenocarcinoma | Female | >=65 | I/II | Chemotherapy | fluorouracil | SD | |
MYOM1 | SNV | Missense_Mutation | rs371246473 | c.2054N>A | p.Arg685Gln | p.R685Q | P52179 | protein_coding | tolerated(0.62) | probably_damaging(0.999) | TCGA-AF-6672-01 | Colorectum | rectum adenocarcinoma | Male | <65 | III/IV | Ancillary | leucovorin | PD |
MYOM1 | SNV | Missense_Mutation | rs759276149 | c.4654G>A | p.Asp1552Asn | p.D1552N | P52179 | protein_coding | deleterious(0.02) | benign(0.154) | TCGA-AG-A002-01 | Colorectum | rectum adenocarcinoma | Male | <65 | I/II | Unknown | Unknown | SD |
MYOM1 | SNV | Missense_Mutation | c.3801G>T | p.Glu1267Asp | p.E1267D | P52179 | protein_coding | tolerated(0.07) | benign(0.006) | TCGA-AG-A002-01 | Colorectum | rectum adenocarcinoma | Male | <65 | I/II | Unknown | Unknown | SD | |
MYOM1 | SNV | Missense_Mutation | novel | c.3507C>A | p.Phe1169Leu | p.F1169L | P52179 | protein_coding | deleterious(0.01) | benign(0.075) | TCGA-AG-A002-01 | Colorectum | rectum adenocarcinoma | Male | <65 | I/II | Unknown | Unknown | SD |
MYOM1 | SNV | Missense_Mutation | rs762430543 | c.2839C>T | p.Arg947Cys | p.R947C | P52179 | protein_coding | deleterious(0.01) | probably_damaging(0.946) | TCGA-AG-A002-01 | Colorectum | rectum adenocarcinoma | Male | <65 | I/II | Unknown | Unknown | SD |
MYOM1 | SNV | Missense_Mutation | novel | c.2162N>T | p.Gly721Val | p.G721V | P52179 | protein_coding | deleterious(0) | probably_damaging(1) | TCGA-AG-A02X-01 | Colorectum | rectum adenocarcinoma | Male | >=65 | I/II | Unknown | Unknown | SD |
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Related drugs of malignant transformation related genes |
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(DGIdb 4.0) |
Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
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