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Gene: MFSD4A |
Gene summary for MFSD4A |
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Gene information | Species | Human | Gene symbol | MFSD4A | Gene ID | 148808 |
Gene name | major facilitator superfamily domain containing 4A | |
Gene Alias | MFSD4 | |
Cytomap | 1q32.1 | |
Gene Type | protein-coding | GO ID | GO:0006810 | UniProtAcc | Q8N468 |
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Malignant transformation analysis |
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Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
148808 | MFSD4A | HTA11_347_2000001011 | Human | Colorectum | AD | 2.93e-05 | 3.57e-01 | -0.1954 |
148808 | MFSD4A | HTA11_411_2000001011 | Human | Colorectum | SER | 5.90e-05 | 8.38e-01 | -0.2602 |
148808 | MFSD4A | HTA11_5212_2000001011 | Human | Colorectum | AD | 2.09e-09 | 9.08e-01 | -0.2061 |
148808 | MFSD4A | RNA-P17T-P17T-2 | Human | Lung | IAC | 1.23e-04 | 5.55e-01 | 0.3371 |
148808 | MFSD4A | RNA-P17T-P17T-6 | Human | Lung | IAC | 2.00e-06 | 6.71e-01 | 0.3385 |
148808 | MFSD4A | RNA-P17T-P17T-8 | Human | Lung | IAC | 1.10e-05 | 5.42e-01 | 0.3329 |
148808 | MFSD4A | RNA-P6T2-P6T2-4 | Human | Lung | IAC | 4.15e-07 | 3.32e-01 | -0.0121 |
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∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
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Malignant transformation related pathway analysis |
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Tissue | Disease Stage | Enriched GO biological Processes |
Colorectum | AD | ![]() |
Colorectum | SER | ![]() |
Colorectum | MSS | ![]() |
Colorectum | MSI-H | ![]() |
Colorectum | FAP | ![]() |
∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
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GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
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Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
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Cell-cell communication analysis |
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Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
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Single-cell gene regulatory network inference analysis |
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TF | Cell Type | Tissue | Disease Stage | Target Gene | RSS | Regulon Activity |
∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
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Somatic mutation of malignant transformation related genes |
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Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
MFSD4A | SNV | Missense_Mutation | rs545692163 | c.313G>A | p.Val105Met | p.V105M | Q8N468 | protein_coding | deleterious(0) | probably_damaging(0.986) | TCGA-UF-A7JK-01 | Oral cavity | head & neck squamous cell carcinoma | Male | <65 | I/II | Chemotherapy | cisplatin | PD |
MFSD4A | SNV | Missense_Mutation | c.1244N>A | p.Ser415Asn | p.S415N | Q8N468 | protein_coding | deleterious(0) | probably_damaging(1) | TCGA-BR-6452-01 | Stomach | stomach adenocarcinoma | Female | >=65 | I/II | Unknown | Unknown | SD | |
MFSD4A | SNV | Missense_Mutation | c.1448N>C | p.Leu483Ser | p.L483S | Q8N468 | protein_coding | deleterious(0.04) | benign(0.03) | TCGA-BR-6452-01 | Stomach | stomach adenocarcinoma | Female | >=65 | I/II | Unknown | Unknown | SD | |
MFSD4A | SNV | Missense_Mutation | c.916N>A | p.Ser306Thr | p.S306T | Q8N468 | protein_coding | tolerated(0.6) | benign(0.014) | TCGA-BR-8372-01 | Stomach | stomach adenocarcinoma | Male | <65 | III/IV | Chemotherapy | etoposide | CR | |
MFSD4A | SNV | Missense_Mutation | rs750941919 | c.962C>T | p.Thr321Met | p.T321M | Q8N468 | protein_coding | deleterious(0.02) | probably_damaging(0.997) | TCGA-DJ-A4UQ-01 | Thyroid | thyroid carcinoma | Male | <65 | I/II | Unknown | Unknown | SD |
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Related drugs of malignant transformation related genes |
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(DGIdb 4.0) |
Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
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