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Gene: GFOD1 |
Gene summary for GFOD1 |
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Gene information | Species | Human | Gene symbol | GFOD1 | Gene ID | 54438 |
Gene name | glucose-fructose oxidoreductase domain containing 1 | |
Gene Alias | ADG-90 | |
Cytomap | 6p24.1-p23 | |
Gene Type | protein-coding | GO ID | GO:0005575 | UniProtAcc | Q9NXC2 |
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Malignant transformation analysis |
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Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
54438 | GFOD1 | CCI_1 | Human | Cervix | CC | 1.30e-06 | 5.47e-01 | 0.528 |
54438 | GFOD1 | CCI_2 | Human | Cervix | CC | 3.04e-15 | 1.22e+00 | 0.5249 |
54438 | GFOD1 | CCI_3 | Human | Cervix | CC | 8.42e-11 | 7.26e-01 | 0.516 |
54438 | GFOD1 | sample3 | Human | Cervix | CC | 8.41e-06 | 1.35e-01 | 0.1387 |
54438 | GFOD1 | T3 | Human | Cervix | CC | 4.88e-06 | 1.54e-01 | 0.1389 |
54438 | GFOD1 | HTA11_99999974143_84620 | Human | Colorectum | MSS | 1.76e-04 | -2.18e-01 | 0.3005 |
54438 | GFOD1 | A002-C-201 | Human | Colorectum | FAP | 3.21e-03 | -1.87e-01 | 0.0324 |
54438 | GFOD1 | A002-C-205 | Human | Colorectum | FAP | 2.48e-05 | -2.13e-01 | -0.1236 |
54438 | GFOD1 | A015-C-005 | Human | Colorectum | FAP | 4.89e-03 | -2.13e-01 | -0.0336 |
54438 | GFOD1 | A002-C-114 | Human | Colorectum | FAP | 2.32e-05 | -2.36e-01 | -0.1561 |
54438 | GFOD1 | A002-C-016 | Human | Colorectum | FAP | 1.63e-05 | -1.68e-01 | 0.0521 |
54438 | GFOD1 | A002-C-116 | Human | Colorectum | FAP | 8.98e-05 | -1.90e-01 | -0.0452 |
54438 | GFOD1 | A014-C-008 | Human | Colorectum | FAP | 1.69e-02 | -2.03e-01 | -0.191 |
54438 | GFOD1 | A018-E-020 | Human | Colorectum | FAP | 5.36e-06 | -2.39e-01 | -0.2034 |
54438 | GFOD1 | F072B | Human | Colorectum | FAP | 3.23e-02 | -2.01e-01 | 0.257 |
54438 | GFOD1 | LZE7T | Human | Esophagus | ESCC | 1.04e-04 | 2.01e-01 | 0.0667 |
54438 | GFOD1 | LZE20T | Human | Esophagus | ESCC | 4.17e-04 | 1.27e-01 | 0.0662 |
54438 | GFOD1 | LZE24T | Human | Esophagus | ESCC | 3.28e-03 | 8.70e-02 | 0.0596 |
54438 | GFOD1 | P4T-E | Human | Esophagus | ESCC | 3.93e-07 | 1.87e-01 | 0.1323 |
54438 | GFOD1 | P5T-E | Human | Esophagus | ESCC | 3.31e-13 | 2.31e-01 | 0.1327 |
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∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
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Malignant transformation related pathway analysis |
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Tissue | Disease Stage | Enriched GO biological Processes |
Colorectum | AD | ![]() |
Colorectum | SER | ![]() |
Colorectum | MSS | ![]() |
Colorectum | MSI-H | ![]() |
Colorectum | FAP | ![]() |
∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
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GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
GO:0022411111 | Esophagus | ESCC | cellular component disassembly | 305/8552 | 443/18723 | 1.94e-23 | 4.57e-21 | 305 |
GO:0006417111 | Esophagus | ESCC | regulation of translation | 304/8552 | 468/18723 | 1.53e-17 | 1.33e-15 | 304 |
GO:003298416 | Esophagus | ESCC | protein-containing complex disassembly | 151/8552 | 224/18723 | 3.45e-11 | 1.15e-09 | 151 |
GO:001820816 | Esophagus | ESCC | peptidyl-proline modification | 46/8552 | 58/18723 | 1.59e-07 | 2.51e-06 | 46 |
GO:003406315 | Esophagus | ESCC | stress granule assembly | 23/8552 | 26/18723 | 6.82e-06 | 6.90e-05 | 23 |
GO:00181263 | Esophagus | ESCC | protein hydroxylation | 23/8552 | 27/18723 | 2.60e-05 | 2.19e-04 | 23 |
GO:00432446 | Esophagus | ESCC | regulation of protein-containing complex disassembly | 75/8552 | 121/18723 | 2.17e-04 | 1.36e-03 | 75 |
GO:00195114 | Esophagus | ESCC | peptidyl-proline hydroxylation | 13/8552 | 15/18723 | 1.31e-03 | 6.26e-03 | 13 |
GO:00436245 | Esophagus | ESCC | cellular protein complex disassembly | 78/8552 | 136/18723 | 4.00e-03 | 1.62e-02 | 78 |
GO:002241112 | Liver | HCC | cellular component disassembly | 282/7958 | 443/18723 | 1.02e-19 | 1.38e-17 | 282 |
GO:000641722 | Liver | HCC | regulation of translation | 287/7958 | 468/18723 | 8.79e-17 | 8.08e-15 | 287 |
GO:003298411 | Liver | HCC | protein-containing complex disassembly | 138/7958 | 224/18723 | 5.59e-09 | 1.46e-07 | 138 |
GO:00340632 | Liver | HCC | stress granule assembly | 24/7958 | 26/18723 | 1.35e-07 | 2.57e-06 | 24 |
GO:001820811 | Liver | HCC | peptidyl-proline modification | 42/7958 | 58/18723 | 3.73e-06 | 4.85e-05 | 42 |
GO:00432444 | Liver | HCC | regulation of protein-containing complex disassembly | 66/7958 | 121/18723 | 4.94e-03 | 2.07e-02 | 66 |
GO:0018126 | Liver | HCC | protein hydroxylation | 18/7958 | 27/18723 | 9.75e-03 | 3.66e-02 | 18 |
GO:00436242 | Liver | HCC | cellular protein complex disassembly | 71/7958 | 136/18723 | 1.39e-02 | 4.95e-02 | 71 |
GO:002241119 | Oral cavity | OSCC | cellular component disassembly | 283/7305 | 443/18723 | 9.57e-27 | 3.37e-24 | 283 |
GO:000641720 | Oral cavity | OSCC | regulation of translation | 274/7305 | 468/18723 | 4.39e-18 | 4.63e-16 | 274 |
GO:003298410 | Oral cavity | OSCC | protein-containing complex disassembly | 136/7305 | 224/18723 | 3.42e-11 | 1.13e-09 | 136 |
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Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
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Cell-cell communication analysis |
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Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
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Single-cell gene regulatory network inference analysis |
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TF | Cell Type | Tissue | Disease Stage | Target Gene | RSS | Regulon Activity |
∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
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Somatic mutation of malignant transformation related genes |
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Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
GFOD1 | SNV | Missense_Mutation | c.356G>A | p.Gly119Asp | p.G119D | Q9NXC2 | protein_coding | tolerated(0.16) | benign(0.185) | TCGA-BR-4361-01 | Stomach | stomach adenocarcinoma | Female | >=65 | III/IV | Unknown | Unknown | SD | |
GFOD1 | SNV | Missense_Mutation | c.218N>T | p.Pro73Leu | p.P73L | Q9NXC2 | protein_coding | deleterious(0) | probably_damaging(1) | TCGA-BR-6802-01 | Stomach | stomach adenocarcinoma | Male | >=65 | III/IV | Ancillary | leucovorin | CR | |
GFOD1 | SNV | Missense_Mutation | c.514N>A | p.Gly172Ser | p.G172S | Q9NXC2 | protein_coding | tolerated(0.52) | benign(0.389) | TCGA-BR-6852-01 | Stomach | stomach adenocarcinoma | Female | <65 | I/II | Unknown | Unknown | SD | |
GFOD1 | SNV | Missense_Mutation | rs556070235 | c.565G>A | p.Gly189Ser | p.G189S | Q9NXC2 | protein_coding | tolerated(0.21) | benign(0.029) | TCGA-CG-4306-01 | Stomach | stomach adenocarcinoma | Male | >=65 | III/IV | Unknown | Unknown | SD |
GFOD1 | SNV | Missense_Mutation | c.559N>A | p.Leu187Ile | p.L187I | Q9NXC2 | protein_coding | tolerated(0.06) | probably_damaging(0.913) | TCGA-CG-4442-01 | Stomach | stomach adenocarcinoma | Male | >=65 | I/II | Unknown | Unknown | SD | |
GFOD1 | SNV | Missense_Mutation | c.193N>A | p.Asp65Asn | p.D65N | Q9NXC2 | protein_coding | deleterious(0.05) | probably_damaging(0.997) | TCGA-CG-5721-01 | Stomach | stomach adenocarcinoma | Male | <65 | III/IV | Unknown | Unknown | SD | |
GFOD1 | SNV | Missense_Mutation | c.1003N>A | p.Ala335Thr | p.A335T | Q9NXC2 | protein_coding | deleterious(0) | probably_damaging(0.962) | TCGA-CG-5723-01 | Stomach | stomach adenocarcinoma | Male | >=65 | I/II | Unknown | Unknown | SD | |
GFOD1 | SNV | Missense_Mutation | c.940N>T | p.Arg314Cys | p.R314C | Q9NXC2 | protein_coding | deleterious(0) | probably_damaging(0.972) | TCGA-CG-5726-01 | Stomach | stomach adenocarcinoma | Male | >=65 | I/II | Unknown | Unknown | SD | |
GFOD1 | SNV | Missense_Mutation | c.320C>T | p.Ala107Val | p.A107V | Q9NXC2 | protein_coding | deleterious(0) | probably_damaging(0.943) | TCGA-HU-8602-01 | Stomach | stomach adenocarcinoma | Female | <65 | I/II | Chemotherapy | xeloda | CR | |
GFOD1 | SNV | Missense_Mutation | c.514N>A | p.Gly172Ser | p.G172S | Q9NXC2 | protein_coding | tolerated(0.52) | benign(0.389) | TCGA-HU-A4G8-01 | Stomach | stomach adenocarcinoma | Female | >=65 | I/II | Chemotherapy | 5-fluorouracil | SD |
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Related drugs of malignant transformation related genes |
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(DGIdb 4.0) |
Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
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