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Gene: DEPDC7 |
Gene summary for DEPDC7 |
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Gene information | Species | Human | Gene symbol | DEPDC7 | Gene ID | 91614 |
Gene name | DEP domain containing 7 | |
Gene Alias | TR2 | |
Cytomap | 11p13 | |
Gene Type | protein-coding | GO ID | GO:0007154 | UniProtAcc | Q96QD5 |
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Malignant transformation analysis |
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Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
91614 | DEPDC7 | NAFLD1 | Human | Liver | NAFLD | 5.35e-05 | 5.11e-01 | -0.04 |
91614 | DEPDC7 | S43 | Human | Liver | Cirrhotic | 4.78e-05 | -1.58e-01 | -0.0187 |
91614 | DEPDC7 | HCC1_Meng | Human | Liver | HCC | 7.72e-11 | -1.24e-01 | 0.0246 |
91614 | DEPDC7 | cirrhotic1 | Human | Liver | Cirrhotic | 1.17e-02 | -1.48e-01 | 0.0202 |
91614 | DEPDC7 | cirrhotic2 | Human | Liver | Cirrhotic | 2.78e-02 | -1.47e-01 | 0.0201 |
91614 | DEPDC7 | HCC1 | Human | Liver | HCC | 5.22e-03 | 2.42e+00 | 0.5336 |
91614 | DEPDC7 | Pt14.d | Human | Liver | HCC | 4.78e-05 | -1.43e-01 | 0.0143 |
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Tissue | Expression Dynamics | Abbreviation |
Liver | ![]() | HCC: Hepatocellular carcinoma |
NAFLD: Non-alcoholic fatty liver disease |
∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
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Malignant transformation related pathway analysis |
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Tissue | Disease Stage | Enriched GO biological Processes |
Colorectum | AD | ![]() |
Colorectum | SER | ![]() |
Colorectum | MSS | ![]() |
Colorectum | MSI-H | ![]() |
Colorectum | FAP | ![]() |
∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
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GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
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Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
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Cell-cell communication analysis |
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Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
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Single-cell gene regulatory network inference analysis |
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TF | Cell Type | Tissue | Disease Stage | Target Gene | RSS | Regulon Activity |
∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
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Somatic mutation of malignant transformation related genes |
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Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
DEPDC7 | SNV | Missense_Mutation | rs748025899 | c.389G>A | p.Ser130Asn | p.S130N | Q96QD5 | protein_coding | deleterious(0) | probably_damaging(0.998) | TCGA-FI-A2D5-01 | Endometrium | uterine corpus endometrioid carcinoma | Female | <65 | III/IV | Chemotherapy | carboplatinum | PD |
DEPDC7 | SNV | Missense_Mutation | c.441G>T | p.Glu147Asp | p.E147D | Q96QD5 | protein_coding | tolerated(0.39) | benign(0.001) | TCGA-QS-A5YQ-01 | Endometrium | uterine corpus endometrioid carcinoma | Female | <65 | III/IV | Chemotherapy | cisplatin | CR | |
DEPDC7 | SNV | Missense_Mutation | c.10N>A | p.Val4Met | p.V4M | Q96QD5 | protein_coding | deleterious(0) | benign(0.018) | TCGA-DD-A3A5-01 | Liver | liver hepatocellular carcinoma | Female | >=65 | III/IV | Unknown | Unknown | PD | |
DEPDC7 | SNV | Missense_Mutation | c.139N>G | p.Gln47Glu | p.Q47E | Q96QD5 | protein_coding | deleterious(0.02) | benign(0.036) | TCGA-38-4629-01 | Lung | lung adenocarcinoma | Male | >=65 | I/II | Unknown | Unknown | PD | |
DEPDC7 | SNV | Missense_Mutation | c.514N>C | p.Glu172Gln | p.E172Q | Q96QD5 | protein_coding | deleterious(0.03) | possibly_damaging(0.877) | TCGA-55-A4DF-01 | Lung | lung adenocarcinoma | Male | >=65 | I/II | Unknown | Unknown | PD | |
DEPDC7 | SNV | Missense_Mutation | c.936N>A | p.Ser312Arg | p.S312R | Q96QD5 | protein_coding | tolerated(0.1) | benign(0) | TCGA-73-4668-01 | Lung | lung adenocarcinoma | Female | >=65 | I/II | Chemotherapy | pemetrexed | PD | |
DEPDC7 | SNV | Missense_Mutation | novel | c.572N>T | p.Ser191Phe | p.S191F | Q96QD5 | protein_coding | deleterious(0.04) | benign(0.003) | TCGA-MN-A4N4-01 | Lung | lung adenocarcinoma | Male | <65 | I/II | Unknown | Unknown | SD |
DEPDC7 | SNV | Missense_Mutation | rs747521659 | c.1312N>G | p.Gln438Glu | p.Q438E | Q96QD5 | protein_coding | tolerated(0.07) | probably_damaging(0.952) | TCGA-NJ-A55R-01 | Lung | lung adenocarcinoma | Male | >=65 | I/II | Unknown | Unknown | SD |
DEPDC7 | SNV | Missense_Mutation | c.505N>C | p.Ala169Pro | p.A169P | Q96QD5 | protein_coding | tolerated(0.25) | benign(0) | TCGA-18-4083-01 | Lung | lung squamous cell carcinoma | Male | <65 | I/II | Chemotherapy | cisplatin | SD | |
DEPDC7 | SNV | Missense_Mutation | novel | c.148N>T | p.Val50Leu | p.V50L | Q96QD5 | protein_coding | deleterious(0) | probably_damaging(0.998) | TCGA-63-A5MW-01 | Lung | lung squamous cell carcinoma | Male | >=65 | I/II | Unknown | Unknown | SD |
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Related drugs of malignant transformation related genes |
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(DGIdb 4.0) |
Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
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